View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_3 (Length: 659)
Name: NF20151_low_3
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 10 - 640
Target Start/End: Original strand, 43799538 - 43800168
Alignment:
| Q |
10 |
attattctcaacaatttaccagtatcagccgatttttgtgatatacattgaagccgtggatgtcaacatcaggagcttccttaagaaatccaattgtcac |
109 |
Q |
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| T |
43799538 |
attattctcaacaatttaccagtatcagccgatttttgtgatatacattgaagccgtggatgtcaacatcaggagcttccttaagaaatccaattgtcac |
43799637 |
T |
|
| Q |
110 |
aaatattgcctgcacagttagtccataatgaaaagaccaagtcaaattatagcaagcacttattccttggttcaactacttagtcctaaatatttgaaac |
209 |
Q |
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| T |
43799638 |
aaatattgcctgcacagttagtccataatgaaaagaccaagtcaaattatagcaagcacttattccttggttcaactacttagtcctaaatatttgaaac |
43799737 |
T |
|
| Q |
210 |
actaactcccaatatcaacattgaatcaaacttgcatgtaaacataaaacaattcatgttgctgccccaatcattcaagataaaaattaaaattccaata |
309 |
Q |
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| T |
43799738 |
actaactcccaatatcaacattgaatcaaacttgcatgtaaacataaaacaattcatgttgctgccccaatcattcaagataaaaattaaaattccaata |
43799837 |
T |
|
| Q |
310 |
caagatagaatggaacggtgcattctccacacttttccaaaaggctcttgcattagagggcatgtatggttagaaatgaaaccattcatgcacttacacc |
409 |
Q |
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| T |
43799838 |
caagatagaatggaacggtgcattctccacacttttccaaaaggctcttgcattagagggcatgtatggttagaaatgaaaccattcatgcacttacacc |
43799937 |
T |
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| Q |
410 |
tatcgtcttaaacttttaagataatttttcatgacaaagcctatgtagcctgtcaaaaaccaactcttttaaaagcttaaaccgttagcctgccaggtat |
509 |
Q |
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| T |
43799938 |
tatcgtcttaaacttttaagataattgttcatgacaaagcctatgtagcctgtcaaaaaccaactcttttaaaagcttaaaccgttagcctgccaggtat |
43800037 |
T |
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| Q |
510 |
agactcataaatgacttcatatctataacagccaatatgatttttcacagtaaatatagaaaacaaaatcaatagttagataagaacctcttctaaacca |
609 |
Q |
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| T |
43800038 |
agactcataaatgacttcatatctataacagccaatatgatttttcacagtaaatatagaaaacaaaatcaatagttagataagaacctcttctaaacca |
43800137 |
T |
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| Q |
610 |
ccaccgtgtggtctatacttgacaaaggcat |
640 |
Q |
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| T |
43800138 |
ccaccgtgtggtctatacttgacaaaggcat |
43800168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 34838635 - 34838722
Alignment:
| Q |
25 |
ttaccagtatcagccgatttttgtgatatacattgaagccgtggatgtcaacatcaggagcttccttaagaaatccaattgtcacaaa |
112 |
Q |
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| T |
34838635 |
ttaccagtatcagccgatgtttgtgatatacattgaaaccatggatgttgacatgaggggcttccttaagaaatccaattgtaacaaa |
34838722 |
T |
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