View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_30 (Length: 473)
Name: NF20151_low_30
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 53 - 386
Target Start/End: Complemental strand, 12246129 - 12245787
Alignment:
| Q |
53 |
tattttgctttgcttgaccggccaaaccttttatattaaaggtttcacaatcattgatcacacataaccctctccctagaaacagtatcattaccatcac |
152 |
Q |
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| T |
12246129 |
tattttgctttgcttgacccgccaaaccttttatattaaaggtttcacaatcattgatcacacataaccctctccctagcaacagtatcattaccatcac |
12246030 |
T |
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| Q |
153 |
aattttaatttccgcaattttaccaatagtctgattattcgtcattgtttgtgatatccatgcctccttttgcaaacaaaaaagatgagatgcttcatat |
252 |
Q |
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| T |
12246029 |
aattttaatttccgcaattttaccaatagtctgattatccgtcattgtttgtgatatccatgccaccttttacaaacaaaaaagatgagttgcttcatac |
12245930 |
T |
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| Q |
253 |
tccttcaaatttgatccttgtacaaccaacacaggtaaatatgggtcctcatc---------ctccaaaatccttcaaagaccagatgtcggtgtcaaca |
343 |
Q |
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| T |
12245929 |
tcctttaaatttgatccttgtacaaccaacacaggtaaatatgggtcctcatcctccttatcctccaaaatccttcaaagaccagatgtcggtgtcaacg |
12245830 |
T |
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| Q |
344 |
ttgctgccagtaaaattacatacaaacggatgccactcaatct |
386 |
Q |
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| T |
12245829 |
ttgctgccagtaaaattacatacaaacgaatgccactcaatct |
12245787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 12245751 - 12245674
Alignment:
| Q |
389 |
ttgccaaaacatagtggaggttcatcgttccaaaagtctaataatttaatttacctccgatccctaaaatattcttcg |
466 |
Q |
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| T |
12245751 |
ttgccaaaacacagagaacgttcatcgttccaaaagtcaaataatttaatttacctccgatccctaaaatattattcg |
12245674 |
T |
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