View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_32 (Length: 459)

Name: NF20151_low_32
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_32
NF20151_low_32
[»] chr8 (3 HSPs)
chr8 (244-442)||(42555672-42555870)
chr8 (201-429)||(42091361-42091579)
chr8 (167-251)||(42556246-42556331)
[»] chr6 (1 HSPs)
chr6 (104-153)||(1100001-1100050)
[»] chr7 (4 HSPs)
chr7 (81-143)||(7562044-7562106)
chr7 (105-141)||(15894689-15894725)
chr7 (105-141)||(15899350-15899386)
chr7 (105-146)||(23956590-23956631)
[»] chr5 (6 HSPs)
chr5 (20-82)||(20855016-20855078)
chr5 (105-141)||(33111279-33111315)
chr5 (20-82)||(20847814-20847876)
chr5 (104-153)||(36423170-36423219)
chr5 (105-141)||(18858675-18858711)
chr5 (61-125)||(34064853-34064917)
[»] chr1 (1 HSPs)
chr1 (105-135)||(24316867-24316897)
[»] chr4 (4 HSPs)
chr4 (105-146)||(1994809-1994850)
chr4 (105-146)||(1995516-1995557)
chr4 (105-138)||(13393259-13393292)
chr4 (105-138)||(13396398-13396431)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 244 - 442
Target Start/End: Complemental strand, 42555870 - 42555672
Alignment:
Q  244 tgttctgatgattatattttggaatgaagatatatgtggtctgcatatataagaagactcgcagctcctaagacattaatgccctgattatgaacataat 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555870 tgttctgatgattatattttggaatgaagatatatgtggtctgcatatataagaagactcgcagctcctaagacattaatgccctgattatgaacataat 42555771  T
Q  344 aacaacattgaattttttgagcaatatttgtggctgggttaagaaaggtatgattccaattaagctattttatcttgagagctgatattacccttcata 442  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42555770 aacaacattgaatttttggagcaatatttgtggctgggttaagaaaggtatgattccaattaagctattttattttgagagctgatattacccttcata 42555672  T

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Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 201 - 429
Target Start/End: Original strand, 42091361 - 42091579
Alignment:
Q  201 cacttctagacatgtta-tatctaagaaagtagaaagtaaa-atttgttctgatgattatattttggaatgaagatatatgtggtctgcatatataagaa 298  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||         ||||| | ||||||||||||||||||| ||||||||||     
T  42091361 cacttctagacatgttaatatctaagaaagtagaaagtaaatatttgttctg---------ttttgaagtgaagatatatgtggtctgtatatataaga- 42091450  T
Q  299 gactcgcagctcctaagacattaatgccctgattatgaacataataacaacattgaattttttgagcaatatttgtggctgggttaagaaaggtatgatt 398  Q
      |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||  ||||||||||||||||| ||||    
T  42091451 --ctcgcagctcataagacattaatgccctgattatgaacataataacaacattgaatttttggaccaatatttgtttctgggttaagaaaggtacgatt 42091548  T
Q  399 ccaattaagctattttatcttgagagctgat 429  Q
    |||||||||||||||||| ||||||||||||    
T  42091549 ccaattaagctattttattttgagagctgat 42091579  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 42556331 - 42556246
Alignment:
Q  167 caatttatttttacaagctatgggaagtccatttcacttctagacatgtt-atatctaagaaagtagaaagtaaaatttgttctga 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42556331 caatttatttttacaagctatgggaagtccatttcacttctagacatgttaatatctaagaaagtagaaagtaaaatttgttctga 42556246  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 1100050 - 1100001
Alignment:
Q  104 tattctcatcattctcatataaacatgtcattatcatagtatacatcctc 153  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1100050 tattctcatcattctcatataaacatgtcattctcatagtatacatcctc 1100001  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 7562044 - 7562106
Alignment:
Q  81 tttttgatctaatgtctcgtaagtattctcatcattctcatataaacatgtcattatcatagt 143  Q
    |||||||||||| |  || ||| |||||||||||||||||||||||||||||||| |||||||    
T  7562044 tttttgatctaaaggttcataattattctcatcattctcatataaacatgtcattctcatagt 7562106  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 15894725 - 15894689
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatcata 141  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15894725 attctcatcattctcatataaacatgtcattctcata 15894689  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 15899350 - 15899386
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatcata 141  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15899350 attctcatcattctcatataaacatgtcattctcata 15899386  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 23956590 - 23956631
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatcatagtata 146  Q
    |||||||||||||||||||||  | |||||||||||||||||    
T  23956590 attctcatcattctcatataacaaagtcattatcatagtata 23956631  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 20855078 - 20855016
Alignment:
Q  20 tgattgagtgtggaaaaacacatatgttaattaaagtagagtttttaatctagactatttatt 82  Q
    |||||||||||||||| ||| || ||||||||||| | ||||||||||||| ||| |||||||    
T  20855078 tgattgagtgtggaaagacatatgtgttaattaaaattgagtttttaatcttgaccatttatt 20855016  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 33111315 - 33111279
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatcata 141  Q
    ||||||||||||||||||||||||||||||| |||||    
T  33111315 attctcatcattctcatataaacatgtcattctcata 33111279  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 20847876 - 20847814
Alignment:
Q  20 tgattgagtgtggaaaaacacatatgttaattaaagtagagtttttaatctagactatttatt 82  Q
    ||||||| |||||||| ||| || ||||||||||| | ||||||||||||| ||| |||||||    
T  20847876 tgattgactgtggaaagacatatgtgttaattaaaattgagtttttaatcttgaccatttatt 20847814  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 36423219 - 36423170
Alignment:
Q  104 tattctcatcattctcatataaacatgtcattatcatagtatacatcctc 153  Q
    |||||||||||||||||||||||    ||||| |||||||||||||||||    
T  36423219 tattctcatcattctcatataaaatactcattctcatagtatacatcctc 36423170  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 18858711 - 18858675
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatcata 141  Q
    |||||||||||||||||||||||||| |||| |||||    
T  18858711 attctcatcattctcatataaacatgccattctcata 18858675  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 34064853 - 34064917
Alignment:
Q  61 tttttaatctagactatttatttttgatctaatgtctcgtaagtattctcatcattctcatataa 125  Q
    |||||||||||||| |||||||||| |||||| |  |  ||||| |||||| |||||||||||||    
T  34064853 tttttaatctagaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataa 34064917  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 135
Target Start/End: Complemental strand, 24316897 - 24316867
Alignment:
Q  105 attctcatcattctcatataaacatgtcatt 135  Q
    |||||||||||||||||||||||||||||||    
T  24316897 attctcatcattctcatataaacatgtcatt 24316867  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 1994850 - 1994809
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatcatagtata 146  Q
    |||||||||||||||||||||| ||| |||| ||||||||||    
T  1994850 attctcatcattctcatataaaaatggcattctcatagtata 1994809  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 1995516 - 1995557
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatcatagtata 146  Q
    |||||||||||||||||||||| ||| |||| ||||||||||    
T  1995516 attctcatcattctcatataaaaatgacattctcatagtata 1995557  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 13393259 - 13393292
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatc 138  Q
    |||||||||||||||||||||| |||||||||||    
T  13393259 attctcatcattctcatataaaaatgtcattatc 13393292  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 13396398 - 13396431
Alignment:
Q  105 attctcatcattctcatataaacatgtcattatc 138  Q
    |||||||||||||||||||||| |||||||||||    
T  13396398 attctcatcattctcatataaaaatgtcattatc 13396431  T

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