View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_34 (Length: 454)
Name: NF20151_low_34
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 9323198 - 9323615
Alignment:
| Q |
20 |
agtggtatctaacaacacatttgcagattttaaggtttccatgaggaacagctcggtcgaaatggagatagtcaggccacgtgctacatcaactgctact |
119 |
Q |
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| T |
9323198 |
agtggtatctaacaacacatttgcagattttaaggtttccatgaggaacagctcggtcgaaatggagatagtcagtccacgtgctacatcaactgctact |
9323297 |
T |
|
| Q |
120 |
ttgagcttgtgtgcccatgtcaattgtggaccgtttcttcctgatcaatctgagaattagaatttaacagcaagttcaaacttcaaatattaacaataat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323298 |
ttgagcttgtgtgcccatgtcaattgtggaccgtttcttcctgatcaatctgagaattagaatttaacagcaagttcaaacttcaaatattaacaataat |
9323397 |
T |
|
| Q |
220 |
aacaaacagatataatgaatgagaagttccaaaacatgtactagcagcataagcaaaattgatttgcatttctattattatatgcacataagtgcactac |
319 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323398 |
aacaaacagatataatgaatgagaagttccgaaacatgtac--gcagcataagcaaaattgatttgcatttctattattatatgcacataagtgcactac |
9323495 |
T |
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| Q |
320 |
acaccagagacacaaatacaatgcacttttgcttgagagacaatcttgtgatcaaaatcttctagaaatcattgttgttaaaatctcaatcataatccta |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9323496 |
acaccagagacacaaatacaatgcacttttgcttgagagacaatctttcgatcaaaatcttctagaaatcattgttgttaaaatctcaatcctaatccta |
9323595 |
T |
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| Q |
420 |
aaatcctacaattttgcaat |
439 |
Q |
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| T |
9323596 |
aaatcctaaaattttgcaat |
9323615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 11423921 - 11423735
Alignment:
| Q |
24 |
gtatctaacaacacatttgcagattttaaggtttccatgaggaacagctcggtcgaaatggagatagt-caggccacgtgctacatcaactgctactttg |
122 |
Q |
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||||||||||||||||||| || ||| |||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
11423921 |
gtatctaacaacacatttgtagcttt-aaggttcccatgaggaacagctctgtcaaaatggagatagttcaggccacgtgctacatcaactgctattttg |
11423823 |
T |
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| Q |
123 |
agcttgtgtgcccatgtcaattgtggaccgtttcttcctgatcaatctgagaattagaatttaacagcaagttcaaacttcaaatatt |
210 |
Q |
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||| | ||||||||||| ||| |||||||||||||||||| || |||| |||||| |||||| | ||||| |||| ||||||||| |
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| T |
11423822 |
agcctctgtgcccatgttaatggtggaccgtttcttcctggtcgatctaagaatttcaatttataggaaagtttaaacgtcaaatatt |
11423735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 32304631 - 32304785
Alignment:
| Q |
23 |
ggtatctaacaacacatttgcagattttaaggtttccatgaggaacagctcggtcgaaatggagatag-tcaggccacgtgctacatcaactgctacttt |
121 |
Q |
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|||||||||||||||||||| || ||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |
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| T |
32304631 |
ggtatctaacaacacatttgtagcttt-aaggtttccttgagggacagctcggtcgaaatggagatagttcaggccacgtgctacatcgactactatttt |
32304729 |
T |
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| Q |
122 |
gagcttgtgtgcccatgtcaattgtggaccgtttcttcctgatcaatctgagaatt |
177 |
Q |
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|| | | || |||||||| | ||||||||||| | || | || ||||||||||| |
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| T |
32304730 |
gatcctttgagcccatgttgacggtggaccgtttttccccggtcgatctgagaatt |
32304785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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