View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_35 (Length: 450)
Name: NF20151_low_35
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 23883054 - 23883475
Alignment:
| Q |
18 |
atatggtgttgagtgaggggaagacccgaaattggactgttttttgggcttaggcatgtcatacttcgtggaattggaggaacagaaggatgcatgatga |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23883054 |
atatagtgttgagtgaggggaagacccgaaattggactggtttttgggctaaggcatgtcatacttcgtggaattggaggaacagaaggatgcatgatga |
23883153 |
T |
|
| Q |
118 |
ggattttgtgtcacctagtaatccttggctggaaattagcaagcttgttaattgccatgcagctagtgctaaaactgctactatatatgcaaaacattac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23883154 |
ggattttgtgtcacctagtaatccttggctggaaattagcaggcttgttaattgtcatgcagctagtgctaaaactgctactatatatgcaaaacattac |
23883253 |
T |
|
| Q |
218 |
aatgacaattttggaaaatatcaactggcagcctccctaaaagtggttggattcgtttgatcaccgatggcacatataaaggagggagtgttgcatgggg |
317 |
Q |
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| T |
23883254 |
aatgacaattttggaaaatatcaactggcagcctccctaaaagtggttggattcgtttgatcaccgatggcacatataaaggagggagtgttgcatgggg |
23883353 |
T |
|
| Q |
318 |
agaatggcaaattgatcggtgtcttttggaagagattgcgggcaagtagcgcgtatgtggcagaactttggatagattttgaaggtttgaatttggctag |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23883354 |
agaatggcaaattgatcagtgtcttttggaagagattgcgggcaagcagcgcgtatgtggcagaactttggatagattttgaaggtttgaatttggctag |
23883453 |
T |
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| Q |
418 |
tttccataagatcgagcttcat |
439 |
Q |
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| T |
23883454 |
tttccataagatcgagcttcat |
23883475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 72 - 439
Target Start/End: Complemental strand, 23420190 - 23419834
Alignment:
| Q |
72 |
catgtcatacttcgtggaattggaggaacagaaggatgcatgatgaggattttgtgtcacctagtaatccttggctggaaattagcaagcttgttaattg |
171 |
Q |
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|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
23420190 |
catgtcatacgttgtggaattggaggaacagaacgatgcatgatgaggattttgtgtcacctagtaatccttgactggaaattaacaggcttgttaattg |
23420091 |
T |
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| Q |
172 |
ccatgcagctagtgctaaaactgctactatatatgcaaaacattacaat-------gacaattttggaaaatatcaactggcagcctccctaaaagtggt |
264 |
Q |
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| | ||| |||||||||||||| | || |||||||| |||||| ||||||||||||||||||| ||||||| ||| |
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| T |
23420090 |
tctcgtggctggtgctaaaactgcttccat----gcaaaacactacaattacaaatgacaattttggaaaatatcgactggca-------------tggc |
23420008 |
T |
|
| Q |
265 |
tggattcgtttgatcaccgatggcacatataaaggagggagtgttgcatggggagaatggcaaattgatcggtgtcttttggaagagattgcgggcaagt |
364 |
Q |
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| T |
23420007 |
tggatccgtttgatcacgg-tggcacatataaaggagggagtgttgcatggggagaatagcaaatggatctgtgtctttttggagagattgtggttaagt |
23419909 |
T |
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| Q |
365 |
agcgcgtatgtggcagaactttggatagattttgaaggtttgaatttggctagtttccataagatcgagcttcat |
439 |
Q |
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| T |
23419908 |
agcgcgtaagtggcggaactttggatagtttttgaaggtttgaatttggctggtttccataagatcgagcttcat |
23419834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 23422347 - 23422273
Alignment:
| Q |
72 |
catgtcatacttcgtggaattggaggaacagaaggatgcatgatgaggattttgtgtcacctagtaatccttggc |
146 |
Q |
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|||||||||||| ||||||||| ||||||| || |||||||||||||||| ||||||| |||||||||||||||| |
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| T |
23422347 |
catgtcatactttgtggaattgaaggaacaaaatgatgcatgatgaggatattgtgtcgcctagtaatccttggc |
23422273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 415
Target Start/End: Original strand, 23876941 - 23877055
Alignment:
| Q |
302 |
ggagtgttgcatggggagaatggcaaatt-gatcggtgtcttttggaagagattgcgggcaagtagcgcgtatgtggcagaactttggatagattttgaa |
400 |
Q |
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||||||||||||||| |||||| || ||| |||| ||||||||| |||||||||| ||| ||||| |||||||||| ||||||| | || ||||||| |
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| T |
23876941 |
ggagtgttgcatgggtagaatgacacatttgatctgtgtcttttcgaagagattgggggtgtgtagcacgtatgtggcggaacttttgggagtttttgaa |
23877040 |
T |
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| Q |
401 |
ggtttgaatttggct |
415 |
Q |
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| T |
23877041 |
ggttttaatttggct |
23877055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 415
Target Start/End: Complemental strand, 23422101 - 23421999
Alignment:
| Q |
313 |
tggggagaatggcaaattgatcggtgtcttttggaagagattgcgggcaagtagcgcgtatgtggcagaactttggatagattttgaaggtttgaatttg |
412 |
Q |
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|||| |||||||||||| |||| || |||||| ||| |||||| ||| |||| ||||||||||| ||||||| | | ||||||||||||||||||| |
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| T |
23422101 |
tgggaagaatggcaaatggatctgtatcttttcgaaaagattgggggtgtgtagtgcgtatgtggcggaacttttgggaatttttgaaggtttgaatttg |
23422002 |
T |
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| Q |
413 |
gct |
415 |
Q |
| |
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||| |
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| T |
23422001 |
gct |
23421999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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