View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_36 (Length: 447)
Name: NF20151_low_36
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_36 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 70 - 447
Target Start/End: Complemental strand, 37661763 - 37661383
Alignment:
| Q |
70 |
ataaatcaacaatatctagtatacgtacaccgatacacaaactcatactcactgtttcgaaatattaattatcatttcaatcgtatgataagaatcaacc |
169 |
Q |
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| T |
37661763 |
ataaatcaacaatatctagtataagtacaccgatacacaaactcatacttactatttcgaaatattaattatcatttcagtcgtatgataagaatcaacc |
37661664 |
T |
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| Q |
170 |
ggtgaataatatttt--gagaggagaatcaaccggtaaatagtaataagcctagttgcattgatcatttagccatccattttactcgaatttgatatata |
267 |
Q |
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| T |
37661663 |
ggtaaataatattttttgagaggagaatcaaccggtaaatagtaataagcctagttgcattgatcatttagccgtccgttttactcaaatttgatatata |
37661564 |
T |
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| Q |
268 |
agcaatgtgcatgcatgtagagtgcgacggtgacatgattgattatcctataatcattaggttgataatgagttcttcaaccatatgacttaagttcgat |
367 |
Q |
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| T |
37661563 |
agcaatgtgcatgcatgtagagcgcgatggtgacatgattgattatcctataatcattaggttgataatgagttcttcagccatatgacttaagttcgat |
37661464 |
T |
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| Q |
368 |
atcgtgacacattagaagaag-aagnnnnnnntccttgagacccgtccacctttgatatgaatttccgaaattgatcgaac |
447 |
Q |
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| T |
37661463 |
attgtgacacattagaagaagaaaaaaaaaattccttgagacccgtccacctttgatatgaatttccgaaattgatcgaac |
37661383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 37661834 - 37661781
Alignment:
| Q |
2 |
gccattaaatttttcttaaaaatcctagactgataat-aagattgt-cccctca |
53 |
Q |
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| T |
37661834 |
gccattaaatttttcttaaaaatcctagactgataataaagattgtccccctca |
37661781 |
T |
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