View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_37 (Length: 446)
Name: NF20151_low_37
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_37 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 210 - 446
Target Start/End: Original strand, 35550959 - 35551195
Alignment:
| Q |
210 |
ataagtgtagttcctcattgtaatactcatattttgtgaataatatctctttcaattcaattactctccgttcatagttcttcattatacatggtttgaa |
309 |
Q |
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| T |
35550959 |
ataagtgtagttcctcattgtaatactcatattttgtgaataatatctctttcaattcagttactctccgttcatagttcttcattatacatggtttgaa |
35551058 |
T |
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| Q |
310 |
aagagtgaaacttatccaaatcaaatcaccaaatggtttcatcgagattttcgattcaataacatctcacacgtccttggtttacctttcactctataaa |
409 |
Q |
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| T |
35551059 |
aagagtgaaacttatccaaatcaaatcaccaaatggtttcatcgagattttcgattcaataacatctcacacgtccttggtttacctttcactctacaaa |
35551158 |
T |
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| Q |
410 |
ttcttggggagccaactggctaataggagattgttac |
446 |
Q |
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| T |
35551159 |
ttcttggagagccaactggctaataggagattgttac |
35551195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 35550685 - 35550795
Alignment:
| Q |
29 |
tatatattagattgagaagttaaagataagtttttaaagttgaacttaaaagtttaggtatcctttaattaaaatgaacgggaaatgtgacttgccggta |
128 |
Q |
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| T |
35550685 |
tatatattagattgagaagttaaagataggtttttaaagttggacttaaaagtttaggtatcctttaattaaaatgaacgggaaatgtgacttgccggta |
35550784 |
T |
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| Q |
129 |
acatcaagtga |
139 |
Q |
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| T |
35550785 |
acatcaagtga |
35550795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 35526881 - 35526951
Alignment:
| Q |
33 |
tattagattgagaagttaaagataagtttttaaagttgaacttaaaagtttaggtatcctttaattaaaatg |
104 |
Q |
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| T |
35526881 |
tattagattgagaatttaaagacaagtttttaaatttgatctt-aaagtttgggtatcctttaattaaaatg |
35526951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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