View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_4 (Length: 651)

Name: NF20151_low_4
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_4
NF20151_low_4
[»] chr5 (3 HSPs)
chr5 (9-448)||(9198566-9199003)
chr5 (528-634)||(9199083-9199184)
chr5 (125-156)||(18873184-18873215)
[»] chr3 (17 HSPs)
chr3 (164-229)||(32034165-32034230)
chr3 (177-229)||(19984629-19984681)
chr3 (125-164)||(19984641-19984680)
chr3 (125-164)||(32034166-32034205)
chr3 (125-164)||(42637733-42637772)
chr3 (164-230)||(40926527-40926593)
chr3 (183-229)||(42637727-42637773)
chr3 (164-229)||(26926981-26927046)
chr3 (177-230)||(32516175-32516228)
chr3 (124-164)||(26927166-26927206)
chr3 (129-165)||(39268871-39268907)
chr3 (125-164)||(26926982-26927021)
chr3 (125-164)||(32516187-32516226)
chr3 (125-156)||(39269128-39269159)
chr3 (125-164)||(40926529-40926568)
chr3 (164-229)||(40926855-40926920)
chr3 (244-284)||(42637819-42637859)
[»] chr7 (10 HSPs)
chr7 (164-222)||(38948378-38948436)
chr7 (164-229)||(5266184-5266249)
chr7 (164-229)||(33834024-33834089)
chr7 (244-284)||(29646056-29646096)
chr7 (125-164)||(33834025-33834064)
chr7 (125-156)||(38948403-38948434)
chr7 (126-164)||(5266185-5266223)
chr7 (164-222)||(16564976-16565034)
chr7 (164-222)||(16600628-16600686)
chr7 (125-154)||(5266445-5266474)
[»] chr8 (5 HSPs)
chr8 (164-229)||(25186598-25186663)
chr8 (125-164)||(25186599-25186638)
chr8 (125-164)||(41456312-41456351)
chr8 (125-164)||(43901007-43901046)
chr8 (164-229)||(15968029-15968094)
[»] chr6 (4 HSPs)
chr6 (164-229)||(5592623-5592688)
chr6 (125-164)||(5592648-5592687)
chr6 (164-224)||(8929925-8929985)
chr6 (190-230)||(28985641-28985681)
[»] chr1 (9 HSPs)
chr1 (164-229)||(7171604-7171669)
chr1 (125-164)||(47086111-47086150)
chr1 (164-229)||(6238302-6238367)
chr1 (125-164)||(6237958-6237997)
chr1 (125-164)||(7171605-7171644)
chr1 (164-230)||(38871119-38871186)
chr1 (190-229)||(47086112-47086151)
chr1 (125-164)||(47377913-47377952)
chr1 (129-166)||(4112779-4112816)
[»] chr4 (7 HSPs)
chr4 (164-229)||(3640280-3640346)
chr4 (125-164)||(41743611-41743650)
chr4 (164-229)||(14115710-14115775)
chr4 (125-154)||(14945229-14945258)
chr4 (164-229)||(45684354-45684419)
chr4 (244-284)||(3640448-3640488)
chr4 (125-161)||(53684018-53684054)
[»] chr2 (3 HSPs)
chr2 (125-156)||(4722106-4722137)
chr2 (125-164)||(10485269-10485308)
chr2 (128-164)||(18607246-18607282)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 448
Target Start/End: Original strand, 9198566 - 9199003
Alignment:
Q  9 ggtagattatactttgcgtttttgtttgcgtcagagataaagttgataacgagttacactttcaagttcaaaatgatagtttgtctctattttttgtcca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||    
T  9198566 ggtagattatactttgcgtttttgtttgcgtcagagataaagttgataacgagttacacttttaagtttaaaatgatggtttgtctctattatttgtcca 9198665  T
Q  109 ctcttaccctttttcgtaatgaaattggaggtctaactcatccttaaataccggtttgaattcgataagctcttataccacaatgaaatttgaggtctaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||| |||||||||||||||    
T  9198666 ctcttaccctttttcgtaatgaaattggaggtctaactcatccttaaataccggtttgaattcaacaggctcttataccataataaaatttgaggtctaa 9198765  T
Q  209 cacatccttaaaaaccggttctaaatcggaagaaaagtcttatctatccaatatgggagatgaatttttcccaatatttcgtataatcccataaacaatc 308  Q
    | ||||||||||||||| |||||||||||||||| |||||||||||||| || || || ||||||||||||||||||||| || ||| ||||||||||||    
T  9198766 cgcatccttaaaaaccgattctaaatcggaagaagagtcttatctatccgatgtgagacatgaatttttcccaatatttcttacaat-ccataaacaatc 9198864  T
Q  309 ttaaaatcaaagaatacaattgaagttgtcttatcaaatctcttannnnnnnagcacatcaaagatggccgtactctcaatatttgggttgtagcttaca 408  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||       ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  9198865 ttaaaatgaaagaatacaattgaagttgtcttgtcaaatctctta-ttttttagcacatcaaacatggccgaactctcaatatttgggttgtagcttaca 9198963  T
Q  409 catctagttgcttcattggcactttaaagtccggttatgg 448  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  9198964 catctaattgcttcattggcactttaaagttcggttatgg 9199003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 528 - 634
Target Start/End: Original strand, 9199083 - 9199184
Alignment:
Q  528 gtccatcacgaagaagcataaactctaaatattctctgcgaaatggttaatcagattaacttaatctaatctaatctaatataataaaatcctcgtggtt 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  9199083 gtccatcacgaagaagcataaactctaaatattctctgcgaaatggttaatcagattaact-----taatctaatctaatataataaaatcctcgtggtt 9199177  T
Q  628 attttct 634  Q
    |||||||    
T  9199178 attttct 9199184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 18873184 - 18873215
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaa 156  Q
    ||||||||||||||||||||||||||||||||    
T  18873184 taatgaaattggaggtctaactcatccttaaa 18873215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 32034230 - 32034165
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||| |||| ||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  32034230 ttgaaatcgacaagctctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 32034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 19984629 - 19984681
Alignment:
Q  177 gctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  19984629 gctctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 19984681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 19984641 - 19984680
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  19984641 taatgaaattggaggtctaactcatccttaaaaaccggtt 19984680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 32034205 - 32034166
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  32034205 taatgaaattggaggtctaactcatccttaaaaaccggtt 32034166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 42637733 - 42637772
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42637733 taatgaaattggaggtctaactcatccttaaaaaccggtt 42637772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 40926593 - 40926527
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttct 230  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  40926593 ttgaaatcgacaggctctaataccataatgaaattggaggcctaactcatccttaaaaaccggttct 40926527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 42637727 - 42637773
Alignment:
Q  183 ataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  42637727 ataccataatgaaattggaggtctaactcatccttaaaaaccggttc 42637773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 26927046 - 26926981
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||| ||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  26927046 ttgaatccgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 26926981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 32516175 - 32516228
Alignment:
Q  177 gctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttct 230  Q
    ||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  32516175 gctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttct 32516228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 26927206 - 26927166
Alignment:
Q  124 gtaatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  26927206 gtaatgaaattggaggcctaactcatccttaaaaaccggtt 26927166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 39268871 - 39268907
Alignment:
Q  129 gaaattggaggtctaactcatccttaaataccggttt 165  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39268871 gaaattggaggtctaactcatccttaaaaaccggttt 39268907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 26927021 - 26926982
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  26927021 taatgaaattggaggcctaactcatccttaaaaaccggtt 26926982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 32516187 - 32516226
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  32516187 taatgaaattggaggcctaactcatccttaaaaaccggtt 32516226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 39269159 - 39269128
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaa 156  Q
    ||||||||||||||||||||||||||||||||    
T  39269159 taatgaaattggaggtctaactcatccttaaa 39269128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 40926568 - 40926529
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  40926568 taatgaaattggaggcctaactcatccttaaaaaccggtt 40926529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 40926920 - 40926855
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||| |||| | ||||| |||||| |||||||||  ||| ||||| |||||||||||||||||||    
T  40926920 ttgaaatcgacaggctctgataccataatgaaattgaaggactaactcatccttaaaaaccggttc 40926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 42637819 - 42637859
Alignment:
Q  244 agtcttatctatccaatatgggagatgaatttttcccaata 284  Q
    ||||||||||||||||| ||||| |||| ||||||||||||    
T  42637819 agtcttatctatccaatgtgggatatgagtttttcccaata 42637859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 38948378 - 38948436
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 222  Q
    |||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||    
T  38948378 ttgaattcgacaagctctgataccataatgaaattggaggtctaactcatccttaaaaa 38948436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 5266249 - 5266184
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  5266249 ttgaattcgacaggctctgataccagaatgaaattggaggcctaactcatccttaaaaaccggttc 5266184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 33834089 - 33834024
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  33834089 ttgaaatcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 33834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 29646096 - 29646056
Alignment:
Q  244 agtcttatctatccaatatgggagatgaatttttcccaata 284  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  29646096 agtcttatctatccaatgtgggacatgaatttttcccaata 29646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 33834064 - 33834025
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  33834064 taatgaaattggaggcctaactcatccttaaaaaccggtt 33834025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 38948403 - 38948434
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaa 156  Q
    ||||||||||||||||||||||||||||||||    
T  38948403 taatgaaattggaggtctaactcatccttaaa 38948434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 5266223 - 5266185
Alignment:
Q  126 aatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  5266223 aatgaaattggaggcctaactcatccttaaaaaccggtt 5266185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 16565034 - 16564976
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 222  Q
    |||||||||||||||||| ||||||   |||||||| ||| ||||| ||||||||||||    
T  16565034 ttgaattcgataagctctgataccatgttgaaatttaaggcctaactcatccttaaaaa 16564976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 16600628 - 16600686
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaa 222  Q
    |||||||||||||||||| ||||||   |||||||| ||| ||||| ||||||||||||    
T  16600628 ttgaattcgataagctctgataccatgttgaaatttaaggcctaactcatccttaaaaa 16600686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 5266474 - 5266445
Alignment:
Q  125 taatgaaattggaggtctaactcatcctta 154  Q
    ||||||||||||||||||||||||||||||    
T  5266474 taatgaaattggaggtctaactcatcctta 5266445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 25186663 - 25186598
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  25186663 ttgaattcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 25186598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 25186638 - 25186599
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  25186638 taatgaaattggaggcctaactcatccttaaaaaccggtt 25186599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 41456312 - 41456351
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41456312 taatgaaattggaggcctaactcatccttaaaaaccggtt 41456351  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 43901007 - 43901046
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  43901007 taatgaaattggaggcctaactcatccttaaaaaccggtt 43901046  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 15968029 - 15968094
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||| |||| | ||||| |||||| ||||||||| | || ||||| |||||||||||||||||||    
T  15968029 ttgaaatcgacaggctctgataccataatgaaattggcggcctaactcatccttaaaaaccggttc 15968094  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 5592623 - 5592688
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||||||| |  |||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  5592623 ttgaattcgacagactctgataccataatgaaattggaggtctaactcatccttaaaaaccggttc 5592688  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 5592648 - 5592687
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  5592648 taatgaaattggaggtctaactcatccttaaaaaccggtt 5592687  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 8929985 - 8929925
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaacc 224  Q
    |||||||||| ||||||| ||||||   |||||||||||||||||  |||||||| |||||    
T  8929985 ttgaattcgacaagctctgataccatgttgaaatttgaggtctaattcatccttacaaacc 8929925  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 28985641 - 28985681
Alignment:
Q  190 aatgaaatttgaggtctaacacatccttaaaaaccggttct 230  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  28985641 aatgaaattgggggtctaacccatccttaaaaaccggttct 28985681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 7171669 - 7171604
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||||||| | ||||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  7171669 ttgaattcgacaggctctgataccataatgaaattggaggcctaactcatccttaaaaaccggttc 7171604  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 47086111 - 47086150
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  47086111 taatgaaattggaggtctaactcatccttaaaaaccggtt 47086150  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 6238302 - 6238367
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||||||| | ||||| |||||| ||||||||| ||||  |||| |||||||||||||||||||    
T  6238302 ttgaattcgacaggctctgataccataatgaaattggaggcataactcatccttaaaaaccggttc 6238367  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 6237958 - 6237997
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  6237958 taatgaaattggaggcctaactcatccttaaaaaccggtt 6237997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 7171644 - 7171605
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  7171644 taatgaaattggaggcctaactcatccttaaaaaccggtt 7171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 38871119 - 38871186
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatcctta-aaaaccggttct 230  Q
    |||||||||| ||||||| ||||||   |||||||||||| ||||| |||||||| ||||||||||||    
T  38871119 ttgaattcgacaagctctgataccatgttgaaatttgaggcctaacgcatccttacaaaaccggttct 38871186  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 47086112 - 47086151
Alignment:
Q  190 aatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  47086112 aatgaaattggaggtctaactcatccttaaaaaccggttc 47086151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 47377952 - 47377913
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  47377952 taatgaaattggaggtctaattcatccttaaaaaccggtt 47377913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 4112779 - 4112816
Alignment:
Q  129 gaaattggaggtctaactcatccttaaataccggtttg 166  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  4112779 gaaattggaggcctaactcatccttaaaaaccggtttg 4112816  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 3640346 - 3640280
Alignment:
Q  164 ttgaattcgataag-ctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    |||||||||| ||| |||| |||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  3640346 ttgaattcgacaaggctctgataccataatgaaattagaggcctaactcatccttaaaaaccggttc 3640280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 41743650 - 41743611
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  41743650 taatgaaattggaggcctaactcatccttaaaaaccggtt 41743611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 14115710 - 14115775
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| | ||| |||||||||||||||||||    
T  14115710 ttgaaatcgacaggctctgataccataatgaaattggaggcccaactcatccttaaaaaccggttc 14115775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 14945258 - 14945229
Alignment:
Q  125 taatgaaattggaggtctaactcatcctta 154  Q
    ||||||||||||||||||||||||||||||    
T  14945258 taatgaaattggaggtctaactcatcctta 14945229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 45684354 - 45684419
Alignment:
Q  164 ttgaattcgataagctcttataccacaatgaaatttgaggtctaacacatccttaaaaaccggttc 229  Q
    ||||| |||| | ||||| |||||| ||||||||| |||| ||||| ||||||||||||| |||||    
T  45684354 ttgaaatcgacacgctctgataccataatgaaattggaggcctaactcatccttaaaaactggttc 45684419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 3640488 - 3640448
Alignment:
Q  244 agtcttatctatccaatatgggagatgaatttttcccaata 284  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  3640488 agtcttatctatccgatgtgggagatgagtttttcccaata 3640448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 53684018 - 53684054
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccg 161  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  53684018 taatgaaattggaggcctaactcatccttaaaaaccg 53684054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 4722137 - 4722106
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaa 156  Q
    ||||||||||||||||||||||||||||||||    
T  4722137 taatgaaattggaggtctaactcatccttaaa 4722106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 10485308 - 10485269
Alignment:
Q  125 taatgaaattggaggtctaactcatccttaaataccggtt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  10485308 taatgaaattggaggcctaactcatccttaaaaaccggtt 10485269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 18607246 - 18607282
Alignment:
Q  128 tgaaattggaggtctaactcatccttaaataccggtt 164  Q
    |||||||||||| |||||||||||||||| |||||||    
T  18607246 tgaaattggaggcctaactcatccttaaaaaccggtt 18607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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