View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_low_43 (Length: 427)
Name: NF20151_low_43
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 2820197 - 2819785
Alignment:
| Q |
1 |
tgagtgagaaatacattctagcctgtgattcccctgcactattagtgaagcctcgttactacgatttcttcacacgaagcctacaaccattgcaacatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2820197 |
tgagtgagaaatacattctagcctgtgattcccctgcactattagtgaagcctcgttactacgatttcttcacacgaagcctacagccattgcaacatta |
2820098 |
T |
|
| Q |
101 |
ttggcctataagggacactgacaaatgcaaatccatcaaacatgcagttgattggggaaataatcatgagcaaaaagtgagtctcactccatcgcacatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2820097 |
ttggcctataagggacactgacaaatgcaaatccatcaaacatgcagttgattggggaaataatcatgagcaaaaagtgagtctcactccatcgcacatc |
2819998 |
T |
|
| Q |
201 |
tttttcaattccttgtcattcatatcttaaaagtccatatactgtctatgcttcttagcagtagtaaaggtttaaatcgtgtggttatgatattatatcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2819997 |
tttttcaattccttgtcattcatatcttaaaagtccatatactgtctatgcttcttagcagtagtaaaggtttaaatcgtgtggttatgatattatatcg |
2819898 |
T |
|
| Q |
301 |
cggaaaatctagtcaaatgtttttgacacaacctcaattgtaattgcaatcatgaagacattgaaaaacttgatgtcgagttcaaggcaggccaaagatt |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2819897 |
cagaaaatctagtcaaatgtttttgacacaacctcaattgtaattgcaatcatgaagacatcgaaaaacttgatgtcgagttcaaggcaggccaaagatt |
2819798 |
T |
|
| Q |
401 |
tagtgaccctatg |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2819797 |
tagtgaccctatg |
2819785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University