View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_48 (Length: 418)
Name: NF20151_low_48
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 30241654 - 30242040
Alignment:
| Q |
13 |
ctccaattttaacatctccaacacttgagaaaacaattagaaaccaaattcatatttttgtcaaattttatagcaacttattagaagtaaaatatactta |
112 |
Q |
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| T |
30241654 |
ctccaattttaacatctccaacacttgagaaaacaattagaaaccaaattcatatttttgtcacattttatagcaactta---gaagtaaaatatactta |
30241750 |
T |
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| Q |
113 |
cttggcaccaggtttggcaacattgttgaaaatcttctgagcacaagttctagcttcccattcactactaatctcactttcactgttaccaaaatcatca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30241751 |
cttggcaccaggtttggcaacattgttgaaaatcttctgagcacaagttctagcttcccattcactactaatctcactttcactgttaccaaaatcatca |
30241850 |
T |
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| Q |
213 |
atagtcctagaaatagttgacaaaccagaagacctaacataattaacaagccttttaacactccaaacagaaccactactctccatactaagtttcttca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30241851 |
atagtcctagaaatagttgacaaaccagaagacctaacataattaacaagccttttaacactccaaacagaaccactactctccatactaagtttcttca |
30241950 |
T |
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| Q |
313 |
acttctccatatcaatccttcttgaaccaaatctcttcatcttcttccacctccccacacccggcggcatcgtctttgaacccttcaaag |
402 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30241951 |
acttctccatatcaatcctccttgaaccaaatctcttcatcttcttccacctccccacacccggcggcatcgtctttgaacccttcaaag |
30242040 |
T |
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