View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_49 (Length: 416)
Name: NF20151_low_49
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 43 - 395
Target Start/End: Complemental strand, 31753595 - 31753241
Alignment:
| Q |
43 |
tatattttcacttaagactttgaatcattatgattcaagtatatgagttacttctattgatctcttatgtatattcaacaatgaattcatttacaaaata |
142 |
Q |
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| T |
31753595 |
tatattttcacttaagactttgaatcattatgattcaagtatatgagttacttctattgatctcttatgtatattcaacaatgaattcatttacaaaata |
31753496 |
T |
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| Q |
143 |
tatttctatgttgaaaaactcaacatgaaaatatatannnnnnnn--aagtaaaatatgtgcttagctaaaaggattgatcaagagacatagatggaagg |
240 |
Q |
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| T |
31753495 |
tatttccatgttgaaaaactcaacatgaaaatatatattttttttttaagtaaaatatgtgcttagctaaaaggattgatcaagagacatagatggaagg |
31753396 |
T |
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| Q |
241 |
aataaaaaacataattccatgtttttgtgtaaaagggtctctgacaagatgctcaatgtattgttgaaagctttgaagaataaatgaatttgtattgctt |
340 |
Q |
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| T |
31753395 |
aataaaaaacataattccatgtttttgtgtaaaagggtctctgacaagatgctcaatgtattgttgaaagctttgaagaataaatgaatttgtattgctt |
31753296 |
T |
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| Q |
341 |
gcattcaaacaatcgaatatatgtacaattttaacgtgacaagatacactctgag |
395 |
Q |
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| T |
31753295 |
gcattcaaacaatcgaatatatgtacaattttaacgtgacaagatacactctgag |
31753241 |
T |
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