View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_53 (Length: 414)
Name: NF20151_low_53
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_53 |
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| [»] scaffold1163 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 5951696 - 5951306
Alignment:
| Q |
1 |
actttctcttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5951696 |
actttctcttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtg |
5951597 |
T |
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| Q |
101 |
ttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5951596 |
ttttggaaattatgacatcagactatccatatagtgagtgtactaacccggcacaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaa |
5951497 |
T |
|
| Q |
201 |
gtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatg |
300 |
Q |
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| T |
5951496 |
gtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatg |
5951397 |
T |
|
| Q |
301 |
cagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtc |
391 |
Q |
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| T |
5951396 |
cagaagcacgagagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtc |
5951306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 31951825 - 31951650
Alignment:
| Q |
9 |
ttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaa |
108 |
Q |
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| T |
31951825 |
ttttgtgttaggaacaccggagttcatggcaccggaaatgtacgaggaagaatacaatgaacttgctgatgtttactcatttggcatgtgtgtattggaa |
31951726 |
T |
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| Q |
109 |
attatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaatt |
184 |
Q |
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| T |
31951725 |
atgctcacatctgattatccatatagtgaatgtactaatccagcacagatatacaagaaagtgacatcggtaaatt |
31951650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 28188578 - 28188708
Alignment:
| Q |
38 |
caccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtga |
137 |
Q |
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||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| | | ||| |||||||| |
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| T |
28188578 |
caccagaactgtatgatgaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtgctttggaaattattacatattattgtccttatagtga |
28188677 |
T |
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| Q |
138 |
gtgtactaacccagcgcaaatatacaagaaa |
168 |
Q |
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| T |
28188678 |
gtgtgctaacacggcgtagatatacaagaaa |
28188708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 28153837 - 28153921
Alignment:
| Q |
250 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagt |
334 |
Q |
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| T |
28153837 |
cttttaatgttcaaggtatgctaccagcaacacttttctgatttgaagatgcaaaagcattggagtttattggaaaatgcctagt |
28153921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 36630239 - 36630146
Alignment:
| Q |
17 |
caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaat |
110 |
Q |
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| T |
36630239 |
caggtactccagaattcatggccccagagctttatgaggaagaatacaatgaacttgttgacgtatattcctttggcatgtgtatcttggaaat |
36630146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 28507834 - 28507736
Alignment:
| Q |
101 |
ttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaa |
199 |
Q |
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| T |
28507834 |
ttttggaaatgattacatctgactatctatatagtgaatgtacagactcggcacatatatacaagaaagtgaaatcgtttaattacgaatttggtttaa |
28507736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 391
Target Start/End: Complemental strand, 22396679 - 22396538
Alignment:
| Q |
250 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag |
349 |
Q |
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|||| ||||||||| |||||||||||| | ||||| ||| || |||||||| |||| ||| |||||||||| |||||||||||| || |||| || | |
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| T |
22396679 |
cttttaatgttcagtgtaagctaccagaagcacttatcctgatagaagatgccgaagtacgagagtttattgaaaaatgcctagtgaaagcagtaaaaaa |
22396580 |
T |
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| Q |
350 |
accatcagcaaaagaactgttgcatgatccatttcttgtgtc |
391 |
Q |
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||| | |||||| ||||| |||||||||||||||||||||| |
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| T |
22396579 |
acctttggcaaaataactgctgcatgatccatttcttgtgtc |
22396538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 22396811 - 22396747
Alignment:
| Q |
132 |
tagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtt |
196 |
Q |
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| T |
22396811 |
tagtgagtgtactgacccagctctgttattcaagaaagtgacatcggtaaattcagatcttggtt |
22396747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 22396882 - 22396846
Alignment:
| Q |
36 |
ggcaccagagttgtacgaagaagaatacaatgaactt |
72 |
Q |
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| T |
22396882 |
ggcaccagaattgtacgaagaagaataaaatgaactt |
22396846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 27092456 - 27092402
Alignment:
| Q |
17 |
caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact |
71 |
Q |
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| T |
27092456 |
caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact |
27092402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 27185845 - 27185899
Alignment:
| Q |
17 |
caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact |
71 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
27185845 |
caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact |
27185899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1163
Description:
Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 2290 - 2254
Alignment:
| Q |
36 |
ggcaccagagttgtacgaagaagaatacaatgaactt |
72 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
2290 |
ggcaccagaattgtacgaagaagaatacaatgaactt |
2254 |
T |
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