View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_57 (Length: 405)

Name: NF20151_low_57
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_57
NF20151_low_57
[»] chr3 (2 HSPs)
chr3 (261-388)||(348360-348484)
chr3 (105-146)||(22433046-22433087)
[»] scaffold0047 (2 HSPs)
scaffold0047 (112-178)||(25548-25614)
scaffold0047 (261-360)||(30189-30282)
[»] scaffold0005 (2 HSPs)
scaffold0005 (112-178)||(10906-10972)
scaffold0005 (261-360)||(6251-6344)
[»] chr7 (2 HSPs)
chr7 (270-375)||(43505339-43505438)
chr7 (261-375)||(39071040-39071147)
[»] chr4 (2 HSPs)
chr4 (112-178)||(14828737-14828803)
chr4 (261-360)||(14833355-14833448)
[»] chr8 (2 HSPs)
chr8 (112-217)||(42125090-42125197)
chr8 (327-374)||(42124936-42124984)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 261 - 388
Target Start/End: Complemental strand, 348484 - 348360
Alignment:
Q  261 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaacaatgaatgaatagaaagaaaaagaaatggaaataaattaatattca 360  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  348484 gttttatcacacacaatgataggagtaacacattacgtatttatcaaagacaa---tgaatgaatagaaagaaaaagaaatggaaataaattaatattca 348388  T
Q  361 gtggtagaatgttagtaaatatataatg 388  Q
    |||||||||| |||||||||||||||||    
T  348387 gtggtagaatattagtaaatatataatg 348360  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 22433087 - 22433046
Alignment:
Q  105 catcttgtcttgtaagtaattagagattgtttgaataatttt 146  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  22433087 catcttgtcttctaagtaattagagattgtttgaataatttt 22433046  T

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Target: scaffold0047 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 25548 - 25614
Alignment:
Q  112 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta 178  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  25548 tcttataagtaattagagattgtttgaacaatttttaggtgcatgcacaatcaattttataagttta 25614  T

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Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 30189 - 30282
Alignment:
Q  261 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaacaatgaatgaatagaaagaaaaagaaat-ggaaataaattaatattc 359  Q
    |||||||||||||||  |||| |||||||| |||||||| | |||||||||       |||||||||||| |||||||||| ||| ||||||||| ||||    
T  30189 gttttatcacacacatcgataagagtaacatattacgtacccatcaaagac-------aatgaatagaaataaaaagaaatgggagataaattaacattc 30281  T

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Target: scaffold0005 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 10972 - 10906
Alignment:
Q  112 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta 178  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  10972 tcttataagtaattagagattgtttgaacaatttttaggtgcatgcacaatcaattttataagttta 10906  T

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Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 6344 - 6251
Alignment:
Q  261 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaacaatgaatgaatagaaagaaaaagaaat-ggaaataaattaatattc 359  Q
    |||||||||||||||  |||| |||||||| |||||||| | |||||||||       |||||||||||| |||||||||| ||| ||||||||| ||||    
T  6344 gttttatcacacacatcgataagagtaacatattacgtacccatcaaagac-------aatgaatagaaataaaaagaaatgggagataaattaacattc 6252  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 375
Target Start/End: Original strand, 43505339 - 43505438
Alignment:
Q  270 cacacaatgataggagtaacacattacgtatctatcaaagacaacaatgaatgaatagaaagaaaaagaaatggaaataaattaatattcagtggtagaa 369  Q
    ||||||||| ||||||||| | |||||||| |||||||||||||      ||||||||||||||||||||||  | ||||||||| ||||||||||||||    
T  43505339 cacacaatggtaggagtaaaatattacgtacctatcaaagacaa------atgaatagaaagaaaaagaaataaagataaattaacattcagtggtagaa 43505432  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 39071040 - 39071147
Alignment:
Q  261 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaacaatgaatgaatagaaagaaaaagaaatggaaataaattaatattca 360  Q
    ||||||||||||| |||| ||||||||  | |||||||| |||| ||| ||||      |||||||||| ||||||||||| || ||||||||| ||||     
T  39071040 gttttatcacacaaaatggtaggagtataatattacgtacctataaaaaacaa------atgaatagaa-gaaaaagaaatagagataaattaacattcg 39071132  T
Q  361 gtggtagaatgttag 375  Q
    |||||||||||||||    
T  39071133 gtggtagaatgttag 39071147  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 14828737 - 14828803
Alignment:
Q  112 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta 178  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  14828737 tcttataagtaattagagattgtttgaacaatttttaggtgcatgcacaatcaattttataagttta 14828803  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 14833355 - 14833448
Alignment:
Q  261 gttttatcacacacaatgataggagtaacacattacgtatctatcaaagacaacaatgaatgaatagaaagaaaaagaaat-ggaaataaattaatattc 359  Q
    |||||||||||||||  |||| |||||||| |||||||| | |||||||||       |||||||||||| |||||||||| ||| ||||||||| ||||    
T  14833355 gttttatcacacacatcgataagagtaacatattacgtacccatcaaagac-------aatgaatagaaataaaaagaaatgggagataaattaacattc 14833447  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 42125197 - 42125090
Alignment:
Q  112 tcttgtaagtaattagagattgtttgaataattttttggtgcatgcacagtcaattttataagttta----tagtagatcaagaaaaatgctcaactcgc 207  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||| |||||| |    |||||||||||| |||||||||||||| |    
T  42125197 tcttgtaagta-ttagagattgtttgaataattcttaggtgcatgcacaatcaattttttaagttcattattagtagatcaag-aaaatgctcaactcac 42125100  T
Q  208 ctaaactttt 217  Q
    ||||| ||||    
T  42125099 ctaaattttt 42125090  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 42124984 - 42124936
Alignment:
Q  327 gaaagaaaaagaaatggaa-ataaattaatattcagtggtagaatgtta 374  Q
    ||||||||||||||||| | ||||||||| |||| ||||||||||||||    
T  42124984 gaaagaaaaagaaatgggagataaattaacattccgtggtagaatgtta 42124936  T

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