View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_58 (Length: 404)
Name: NF20151_low_58
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_58 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 7170825 - 7170453
Alignment:
| Q |
1 |
agaattttcaggaaaatgtttgatgaacattgaaacacccagttgagagagaattaaattggttcattattataaatgtaaagggaagaaagatggatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7170825 |
agaattttcaggaaaatgtttgatgaacattgaaacacccagttgagagagaattaaattggttcattattataaatgtaaagggaagaaagatggatag |
7170726 |
T |
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| Q |
101 |
aaataacaagttgaataaatgtaaatgaaatcacattcaagttgataagtactaaaaccaatctatagctttcaataaattctacatgaatatatgtacc |
200 |
Q |
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| T |
7170725 |
agataacaagttgaataaatgtaaatgaaatcacattcaagttgataagtactaaaaccaatctatagctttcaataaattctaaatgaataaatgtacc |
7170626 |
T |
|
| Q |
201 |
aaacttttacaccaattcaacatttcatactgtttatatagcttggattgaattcttaagagcattctcatcgccagttttcttgtcagcacaagaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7170625 |
aaacttttacaccaattcaacatttcatactgtttacatagcttggattgaattcttacgagcattctcatcgccagttttcttgtgagcacaagaagaa |
7170526 |
T |
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| Q |
301 |
ggatcaagcaaggcannnnnnnnnnnnngagaattttcttcttcaacctagatataaaaaacagtgttaaaat |
373 |
Q |
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| T |
7170525 |
ggatcaagcaaggcatttttcattttttgagaattttcttcttcaacctagatataaaaaacagtgtcaaaat |
7170453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 7179066 - 7178969
Alignment:
| Q |
141 |
gttgataagtactaaaaccaatctatagctttcaataaattctacatgaatatatgtaccaaactt---ttacaccaattcaacatttcatactgttt |
235 |
Q |
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| T |
7179066 |
gttgataggtactaaaaccaatctatagctttcaataaattctaaatgaataaatgtaccaacattttattacaccaattcaacttttcataatgttt |
7178969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 14815778 - 14815849
Alignment:
| Q |
122 |
taaatgaaatcacattca---agttgataagtactaaaaccaatctatagctttcaataaattctacatgaa |
190 |
Q |
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| T |
14815778 |
taaatgaaatcacattcatcaagttgataagtactaaaaccaatctatagctttcaataaattctaaatgaa |
14815849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 7173900 - 7173799
Alignment:
| Q |
137 |
tcaagttgataagtactaaaaccaatctatagctttcaataaattctacatgaatatatgtaccaaactt---ttacaccaattcaacatttcatactgt |
233 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||| |||| |||||| ||| |
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| T |
7173900 |
tcaagttgataggtactaaaaccaatctatagctttcaataaattctaaatgaataattgtaccaacattttattacaccaattaaacacttcataatgt |
7173801 |
T |
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| Q |
234 |
tt |
235 |
Q |
| |
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|| |
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| T |
7173800 |
tt |
7173799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 14816125 - 14816256
Alignment:
| Q |
243 |
ttggattgaattcttaagagcattctcatcgccagttttcttgtcagcacaagaagaaggatcaagc-aaggcannnnnnnnnnnnngagaattttcttc |
341 |
Q |
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|||||||||||| ||| ||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
14816125 |
ttggattgaattattacccgcattctcatcaccaattttcttatcagcacaagaagaaggatcaagcaaaggcatttttcattttttcagaattttcttc |
14816224 |
T |
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| Q |
342 |
ttcaacctagatataaaaaacagtgttaaaat |
373 |
Q |
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| T |
14816225 |
tttaacctagatataaaaaacagtgtcaaaat |
14816256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 7178659 - 7178615
Alignment:
| Q |
330 |
agaattttcttcttcaacctagatataaaaaacagtgttaaaata |
374 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
7178659 |
agaattttcttctttaacctagatataaaaaacattgtaaaaata |
7178615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 7174106 - 7174031
Alignment:
| Q |
5 |
ttttcaggaaaatgtttgatgaacattgaaacacccagttgagagagaattaaattggttcattattataaatgtaa |
81 |
Q |
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| T |
7174106 |
tttttaggaaaatgtttgatggacgtcgaaacacccag-tgaaaaagaaagaaattggtttattgttataaatgtaa |
7174031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 23933 - 23862
Alignment:
| Q |
122 |
taaatgaaatcacattca---agttgataagtactaaaaccaatctatagctttcaataaattctacatgaa |
190 |
Q |
| |
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| T |
23933 |
taaatgaaatcacattcatcaagttgataagtactaaaaccaatctatagctttcaataaattctaaatgaa |
23862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 23586 - 23455
Alignment:
| Q |
243 |
ttggattgaattcttaagagcattctcatcgccagttttcttgtcagcacaagaagaaggatcaagc-aaggcannnnnnnnnnnnngagaattttcttc |
341 |
Q |
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|||||||||||| ||| ||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
23586 |
ttggattgaattattacccgcattctcatcaccaattttcttatcagcacaagaagaaggatcaagcaaaggcatttttcattttttcagaattttcttc |
23487 |
T |
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| Q |
342 |
ttcaacctagatataaaaaacagtgttaaaat |
373 |
Q |
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| T |
23486 |
tttaacctagatataaaaaacagtgtcaaaat |
23455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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