View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_low_6 (Length: 637)
Name: NF20151_low_6
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 629
Target Start/End: Original strand, 2172907 - 2173518
Alignment:
| Q |
18 |
atattaagctcatatatgagttgctattaggctttctgttttgtggtctttgatgaggtaaagggtggaatattggaggagaagttattttgttgcctaa |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2172907 |
atattaagctcatatatgagttgttattaggctttctgttttgtggtctttgatgaggtaaagggtggaatattggaggagaagttattttgttgcctaa |
2173006 |
T |
|
| Q |
118 |
tgaaatgtcagcccaagctttcatgaattttgttgcacaaattgaatctgctaagagatgagtgcagcttaggccaattgctaatccaccttcttcaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173007 |
tgaaatgtcagcccaagctttcatgaattttgttgcacaaatggaatctgctaagagatgagtgcagcttaggccaattgctaatccaccttcttcaaat |
2173106 |
T |
|
| Q |
218 |
tcagtcagctgaaattaagatcagaatttaagatgatcattttaaagcatgaatatgaatttatctcacaaaaatgttaacaagaagctgattcaattat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2173107 |
tcagtcagctgaaattaagatcagaatttaagatgatcattttaaaacatgaatatgaatttatctgacaaaaatgttaacaagaagctgattcaattat |
2173206 |
T |
|
| Q |
318 |
taagatgatcatattgaagcatgaatatacttaaaaattgaaaaagagtgtattatttatttgctattaagatctttaaatctcttaatatatctcatca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173207 |
taagatgatcatattgaagcatgaatatacttaaaaattgaaaaagagtgtattatttatttgctattaagatctttaaatctcttaatatatctcatca |
2173306 |
T |
|
| Q |
418 |
aaagcatttttcagtacagaaaattcaaacctggacataaaaagtggaccaataataaggcttttgaagcatatcttcccaataaacaagtttaagttct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173307 |
aaagcatttttcagtacagaaaattcaaacctggacataaaaagtggaccaataataaggcttttgaagcatatcttcccaataaacaagtttaagttct |
2173406 |
T |
|
| Q |
518 |
ttttccctatccacgcttcgtaaccactcttcgacacttcctttggcttttgcctcgaccattctaacaccagcatcattgcatttgatcttccaatgtc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173407 |
ttttccctatccacgcttcgtaaccactcttcgacacttcctttggcttttgcctcgaccattctaacaccagcatcattgcatttgatcttccaatgtc |
2173506 |
T |
|
| Q |
618 |
ccatttcatctc |
629 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2173507 |
ccatttcatctc |
2173518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University