View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_62 (Length: 397)

Name: NF20151_low_62
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_62
NF20151_low_62
[»] chr5 (1 HSPs)
chr5 (14-382)||(8859681-8860049)
[»] chr8 (4 HSPs)
chr8 (168-327)||(43458641-43458800)
chr8 (133-219)||(43548123-43548209)
chr8 (133-219)||(43550050-43550136)
chr8 (264-324)||(43578246-43578306)
[»] chr2 (1 HSPs)
chr2 (240-313)||(29656397-29656470)
[»] chr7 (1 HSPs)
chr7 (139-219)||(25836481-25836561)
[»] scaffold1254 (1 HSPs)
scaffold1254 (147-216)||(2125-2194)
[»] scaffold0419 (1 HSPs)
scaffold0419 (147-216)||(5435-5504)
[»] chr6 (5 HSPs)
chr6 (147-216)||(28838469-28838538)
chr6 (179-233)||(3363642-3363696)
chr6 (337-370)||(3363519-3363552)
chr6 (179-216)||(4605465-4605502)
chr6 (270-318)||(3363572-3363620)
[»] chr4 (1 HSPs)
chr4 (157-241)||(38530979-38531063)
[»] chr1 (2 HSPs)
chr1 (166-278)||(8794635-8794747)
chr1 (203-291)||(32954956-32955044)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 8860049 - 8859681
Alignment:
Q  14 agatgcaaagtaaaacactagtagaaacgataataaggaagttataacatattttggttaaataaatctgaaattcaagaatgatatatagaatcccatc 113  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8860049 agatgcaaagtaaaacacttgaagaaacgataataaggaagttataatatattttggttaaataaatctgaaattcaagaatgatatatagaatcccacc 8859950  T
Q  114 acacaaagttcttatttcagagtccaaggtaagcaatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagt 213  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859949 acacaaagttcttatttcagagtctaagataagcaatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagt 8859850  T
Q  214 taactccgcataatttagccacttgtttcttaacctcaaagaaacaaaaccataattcttgaaagcaaaagtaaccaattgagaatttgtttcaaaccaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8859849 taactccgcataatttagccacttgtttcttaacctcaaagaaacaaaaccataattctttaaagcaaaagtaaccaattgagaatttgtttcaaaccaa 8859750  T
Q  314 agagagattcaaccannnnnnnaaagctatctcaattgcatgcataacctcaatgagatttgtataaaa 382  Q
    |||||||||||||||       |||||||||||||||| |||||||||||||||||| |||||||||||    
T  8859749 agagagattcaaccatttttttaaagctatctcaattggatgcataacctcaatgagctttgtataaaa 8859681  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 327
Target Start/End: Complemental strand, 43458800 - 43458641
Alignment:
Q  168 tgcattctcttaagatatgagaaataatgaaacacatattcttagttaactccgcataatttagccacttgtttcttaacctcaaagaaacaaaaccata 267  Q
    |||||||||| |||||||||||||||||||| |  |||||||||||||||||  || | || | ||||  ||||||||||||| ||| ||| | || ||     
T  43458800 tgcattctctaaagatatgagaaataatgaatctaatattcttagttaactcaacacagttcaaccaccggtttcttaacctccaaggaaccatacaatg 43458701  T
Q  268 attcttgaaagcaaaagtaaccaattgagaatttgtttcaaaccaaagagagattcaacc 327  Q
    |||||| |||| || ||||||||||||||| | |||||| ||||||||||| || |||||    
T  43458700 attctttaaagtaagagtaaccaattgagagtatgtttccaaccaaagagaaatccaacc 43458641  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 43548209 - 43548123
Alignment:
Q  133 gagtccaaggtaagcaatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagttaactc 219  Q
    |||||||| | ||||||| ||||  ||||||||||||  |||||| ||||||||||||||||||||  |||||||||||||| ||||    
T  43548209 gagtccaacggaagcaatgttgtcggcacaacgattgtcttctctgaagatatgagaaataatgaataacatattcttagtttactc 43548123  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 43550050 - 43550136
Alignment:
Q  133 gagtccaaggtaagcaatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagttaactc 219  Q
    |||||||| | ||||||| ||||  ||||||||||||  |||||| ||||||||||||||||||||  |||||||||||||| ||||    
T  43550050 gagtccaacggaagcaatgttgtcggcacaacgattgtcttctctgaagatatgagaaataatgaataacatattcttagtttactc 43550136  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 43578306 - 43578246
Alignment:
Q  264 cataattcttgaaagcaaaagtaaccaattgagaatttgtttcaaaccaaagagagattca 324  Q
    |||||||||| ||| | |||| |||||||||| ||| | |||| |||||||||||||||||    
T  43578306 cataattcttaaaaaccaaagcaaccaattgataatctatttccaaccaaagagagattca 43578246  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 29656397 - 29656470
Alignment:
Q  240 ttcttaacctcaaagaaacaaaaccataattcttgaaagcaaaagtaaccaattgagaatttgtttcaaaccaa 313  Q
    ||||||||||||||||||||| ||||| || ||| |||| || |||||||||  ||||||||||||| ||||||    
T  29656397 ttcttaacctcaaagaaacaagaccatgatccttaaaagtaagagtaaccaaccgagaatttgtttccaaccaa 29656470  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 25836481 - 25836561
Alignment:
Q  139 aaggtaagcaatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagttaactc 219  Q
    |||| |||||||||||| |||||||||||| | |||||| ||||| ||  ||||| |||||| ||||||||||| ||||||    
T  25836481 aagggaagcaatcttgtctgcacaacgatttccttctctgaagatgtgcaaaatagtgaaacgcatattcttaggtaactc 25836561  T

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Target: scaffold1254 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 2125 - 2194
Alignment:
Q  147 caatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagttaa 216  Q
    ||||||||| ||||||||||||   |||| | |||||||||||||||||||| | || ||||||||||||    
T  2125 caatcttgtctgcacaacgattatcttctataaagatatgagaaataatgaatcgcaaattcttagttaa 2194  T

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Target: scaffold0419 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 5504 - 5435
Alignment:
Q  147 caatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagttaa 216  Q
    ||||||||| ||||||||||||   |||| | |||||||||||||||||||| | || ||||||||||||    
T  5504 caatcttgtctgcacaacgattctcttctataaagatatgagaaataatgaatcgcaaattcttagttaa 5435  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 28838538 - 28838469
Alignment:
Q  147 caatcttgtttgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagttaa 216  Q
    ||||||||| ||||||||||||   |||| | |||||||||||||||||||| | || ||||||||||||    
T  28838538 caatcttgtctgcacaacgattatcttctataaagatatgagaaataatgaatcgcaaattcttagttaa 28838469  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 3363696 - 3363642
Alignment:
Q  179 aagatatgagaaataatgaaacacatattcttagttaactccgcataatttagcc 233  Q
    |||||||| ||||||||||||||||||||| ||||||| ||  ||||| ||||||    
T  3363696 aagatatgtgaaataatgaaacacatattcgtagttaattcaacataacttagcc 3363642  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 370
Target Start/End: Complemental strand, 3363552 - 3363519
Alignment:
Q  337 aagctatctcaattgcatgcataacctcaatgag 370  Q
    ||||||||||||||||||||||| ||||||||||    
T  3363552 aagctatctcaattgcatgcatagcctcaatgag 3363519  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 4605502 - 4605465
Alignment:
Q  179 aagatatgagaaataatgaaacacatattcttagttaa 216  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  4605502 aagatatgagaaataatgaatcacatatttttagttaa 4605465  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 3363620 - 3363572
Alignment:
Q  270 tcttgaaagcaaaagtaaccaattgagaatttgtttcaaaccaaagaga 318  Q
    |||||||||||| ||||||||| ||| ||| |||||| |||||||||||    
T  3363620 tcttgaaagcaagagtaaccaaatgaaaatatgtttccaaccaaagaga 3363572  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 38530979 - 38531063
Alignment:
Q  157 tgcacaacgattgcattctcttaagatatgagaaataatgaaacacatattcttagttaactccgcataatttagccacttgttt 241  Q
    ||||||||| ||| ||| ||| ||||||||||| |||||||| ||| |||| |||||||| || ||| |||| | ||||||||||    
T  38530979 tgcacaacggttgtattttctgaagatatgagatataatgaatcacgtatttttagttaaatcagcacaattcaaccacttgttt 38531063  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 8794747 - 8794635
Alignment:
Q  166 attgcattctcttaagatatgagaaataatgaaacacatattcttagttaactccgcataatttagccacttgtttcttaacctcaaagaaacaaaacca 265  Q
    |||| ||||||| ||||| |  |||| ||||||  ||||||||||||||||| |  || ||||| | ||  |||||||||| ||| ||||||||| |||     
T  8794747 attgtattctctaaagatttaggaaacaatgaagaacatattcttagttaacacaacacaattttgtcatctgtttcttaatctccaagaaacaagaccc 8794648  T
Q  266 taattcttgaaag 278  Q
    | |||||||||||    
T  8794647 tgattcttgaaag 8794635  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 32955044 - 32954956
Alignment:
Q  203 atattcttagttaactccgcataatttagccacttgtttcttaacctcaaagaaacaaaaccataattcttgaaagcaaaagtaaccaa 291  Q
    ||||||||||||||||   ||||||| | |||  |||||||||||||  ||| ||||| ||||| |||||| ||||||| | |||||||    
T  32955044 atattcttagttaacttaacataattcaaccatatgtttcttaaccttcaaggaacaagaccatgattcttaaaagcaagaataaccaa 32954956  T

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