View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_63 (Length: 396)
Name: NF20151_low_63
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 33126842 - 33127189
Alignment:
| Q |
20 |
caacaaaaccattaccatgcatcatcaccaatttcataacatcatgtcaatattataactgacgtaataaacaacaaaaaacataagtgtttgataaact |
119 |
Q |
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| T |
33126842 |
caacaaaacgattaccatgcatcatcaccaatttcataacatcatgtcaatattataaatgacgtaataaacaacaaaaaacataagtgtttgataaact |
33126941 |
T |
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| Q |
120 |
cacaggccaaacacgttcataggacgactctccactataccagaagaaacttcnnnnnnncatgacaacaatttctggtttttcgtcttccaaaactctt |
219 |
Q |
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| T |
33126942 |
cacaggccaaacacgttcataggacgactctccactataccagaagaaacttgtttttttcatgacaacaatttctggtttttcgtcttccaaaactctt |
33127041 |
T |
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| Q |
220 |
tcggctaaactaacatgatagatcataataagactccacgagactagccatataattgttgatacttctcttgatattgccatctttttaacttctaaag |
319 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33127042 |
tcggctaaactaacgtgatagatcataataagactccacgagactagccatataattgttgataattctcttgatattgccatctttttaacttctaaag |
33127141 |
T |
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| Q |
320 |
ccatgtatgaacggtttgaagc-aatatttagttaggactctagtatg |
366 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33127142 |
ccatgtatgaacggtttgaagcaaatatttagttaggactctagtatg |
33127189 |
T |
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