View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_64 (Length: 392)
Name: NF20151_low_64
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 33126413 - 33126786
Alignment:
| Q |
17 |
catttgaaagagctttcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagctagttca |
116 |
Q |
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| T |
33126413 |
catttgaaagtgctttcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagctagttca |
33126512 |
T |
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| Q |
117 |
tatagcttctgaatcgcgaccagccacatgctactatttgtagcttcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacg |
216 |
Q |
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| T |
33126513 |
tatagcttctgaatcgcagccaaccacatgctactatttgtagctgcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaacg |
33126612 |
T |
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| Q |
217 |
taaatccaaacatcgactatatatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaaac |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126613 |
taaatccaaacatcgactatacatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaaac |
33126712 |
T |
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| Q |
317 |
caataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttccctatgctactcca |
390 |
Q |
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| T |
33126713 |
caatgatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctcca |
33126786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 7568728 - 7568641
Alignment:
| Q |
291 |
ggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttccc |
378 |
Q |
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| T |
7568728 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttccc |
7568641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 32663744 - 32663699
Alignment:
| Q |
190 |
tgagacgtgagaaagataattgaaacgtaaatccaaacatcgacta |
235 |
Q |
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| T |
32663744 |
tgagacgtgagaaagacaattcaaatgtaaatccaaacattgacta |
32663699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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