View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_65 (Length: 387)
Name: NF20151_low_65
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 134 - 313
Target Start/End: Original strand, 17488988 - 17489166
Alignment:
| Q |
134 |
caaataatgcaaatgtctttagaatataacgaaccaacgaccccccacaatgatttatttttcattggataataacgaatctttcactttgcttaagcta |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
17488988 |
caaataatgcaaatgtctttagaatataacgaaccaacgaccccccacaaagatttatttt-cattggataataacgaacctttcactttgcttaagcta |
17489086 |
T |
|
| Q |
234 |
cactctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctt |
313 |
Q |
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| T |
17489087 |
cactctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctt |
17489166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 105 - 313
Target Start/End: Complemental strand, 17564267 - 17564048
Alignment:
| Q |
105 |
caaatatgaatgaaaataaaaacatttca------------caaataatgcaaatgtctttagaatataacgaaccaacgaccccccacaatgatttatt |
192 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
17564267 |
caaatatgaatgaaaataaaaacatttcacaaacaaacaagcaaataatgcaaatgtctttagaatataacgaaccaacgaccccccacaaagattta-t |
17564169 |
T |
|
| Q |
193 |
tttcattggataataacgaatctttcactttgcttaagctacactctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaag |
292 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564168 |
tttcattggataataacgaacctttcactttgcttaagctacactctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaag |
17564069 |
T |
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| Q |
293 |
aagatgataaattactgcctt |
313 |
Q |
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||||||||||||||||||||| |
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| T |
17564068 |
aagatgataaattactgcctt |
17564048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 134 - 377
Target Start/End: Complemental strand, 17564226 - 17563984
Alignment:
| Q |
134 |
caaataatgcaaatgtctttagaatataacgaaccaacgaccccccacaatgatttatttttcattggataataacgaatctttcactttgcttaagcta |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
17564226 |
caaataatgcaaatgtctttagaatataacgaaccaacgaccccccacaaagatttatttt-cattggataataacgaacctttcactttgcttaagcta |
17564128 |
T |
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| Q |
234 |
cactctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgccttnnnnnnnnnnnnnnnnnnnn |
333 |
Q |
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| T |
17564127 |
cactctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctttaaaatataataaaaataat |
17564028 |
T |
|
| Q |
334 |
nnnnngaagtgtatgctattgacttcacttaatcgttacctttg |
377 |
Q |
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| T |
17564027 |
aagaagaagtgtatgctattgacttcacttaatcgttacctttg |
17563984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 17489192 - 17489230
Alignment:
| Q |
339 |
gaagtgtatgctattgacttcacttaatcgttacctttg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17489192 |
gaagtgtatgctattgacttcacttaatcgttacctttg |
17489230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 17488947 - 17488979
Alignment:
| Q |
105 |
caaatatgaatgaaaataaaaacatttcacaaa |
137 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17488947 |
caaatatgaatgaaaataaaaacatttcacaaa |
17488979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 135 - 313
Target Start/End: Original strand, 1917175 - 1917352
Alignment:
| Q |
135 |
aaataatgcaaatgtctttagaatataacgaaccaacgaccccccacaatgatttatttttcattggataataacgaatctttcactttgcttaagctac |
234 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
1917175 |
aaataatgcaaatgtctttagaatataacgcaccaacgaccccccacaatgatttatttt-cattggataataacgaacctttcactttgcttaagctac |
1917273 |
T |
|
| Q |
235 |
actctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1917274 |
actctttttgtagagggttttaaattaaactacccaattaattttgggaaaagggaagaagatgataaattactgcctt |
1917352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 1917378 - 1917416
Alignment:
| Q |
339 |
gaagtgtatgctattgacttcacttaatcgttacctttg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1917378 |
gaagtgtatgctattgacttcacttaatcgttacctttg |
1917416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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