View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_66 (Length: 385)
Name: NF20151_low_66
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 14414145 - 14414523
Alignment:
| Q |
1 |
ttcactacagggtttctaaaaagaggtgtcccagggttcgcacatatttgttgaagctcattaacaattggaaatggaagcaaaggatcaggtttcctcg |
100 |
Q |
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| T |
14414145 |
ttcactacagggtttctaaaaagaggtgtcccagggttcgcacatatttgttgaagctcattaacaattggaaatggaagcaaaggatcaggtttcctcg |
14414244 |
T |
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| Q |
101 |
tgtctgcgtaattgtaaatcctttccataaaaacatcgcaatgagccacaccaattgaatgcgcaccaagtaaaataaccatttcttcaattgtgaaacc |
200 |
Q |
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| T |
14414245 |
tgtctgcgtaattgtaaatcctttccataaaaacatcgcaatgagccacaccaattgaatgcgcaccaagtaaaataaccatttcttcaattgtgaaacc |
14414344 |
T |
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| Q |
201 |
nnnnnnngtaaagaggtcaaccattttttccatcggccaattaggcattggaaggttgtcgtcttccgcaatagatgctagggaatagagcgcatctcta |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14414345 |
tttttttgtgaagaggtcaaccattttttccatcggccaattaggcattggaaggttgtcgtcttccgcgatagatgctagggaatagagcgcatctcta |
14414444 |
T |
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| Q |
301 |
cggcctccaaggggagctgtacgaggtaatccggaaaggaacattccttcgttaactgaaaatgctattgtgtctgtgc |
379 |
Q |
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| T |
14414445 |
cggcctccaaggggagctgtacgaggtaatccggaaaggaacattccttcgttaactgaaaatgctattgtgtctgtgc |
14414523 |
T |
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