View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_68 (Length: 378)
Name: NF20151_low_68
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 36904029 - 36904388
Alignment:
| Q |
1 |
aatttcaaacgataaaacatcatatataaaaacaaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaaaagaaaacaagaaca |
100 |
Q |
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| T |
36904029 |
aatttcaaacgataaaacatcatatataaaaacaaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaaaagaaaacaagaaca |
36904128 |
T |
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| Q |
101 |
tatactgaaatataatggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccattatactaagaaccctaaaaaccacatcata |
200 |
Q |
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| T |
36904129 |
tatactgaaatataacggccttataaggcaaactaaagcgattgttctaataaattttgaagcaaaccattatactaagaaccccaaaaaacacatcata |
36904228 |
T |
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| Q |
201 |
atactgtatacaaggtaggaaaagaaaatacacaatccagtcacagaaacatnnnnnnnntactccgtgcataggtacacccttgagttggttga-nnnn |
299 |
Q |
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| T |
36904229 |
atactgtatacaaggtaggaaaagaaaatacacaatccagtcacaggaacat-aaaaaaatactccgtgcataggtacacccttgagttggttgattttt |
36904327 |
T |
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| Q |
300 |
nnnnnaaaatatctcatcattgcgacacaatggacacgtgagggatcttttgaaccattgg |
360 |
Q |
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| T |
36904328 |
tttttaaaatatcttatcattgcgacacaatggacacgtgagggatcttttgaaccattgg |
36904388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 37073847 - 37073736
Alignment:
| Q |
34 |
aaacaaggcaatggaaataatagaagatcgtatactcatttagtaaaagaaa-aagaaaacaagaacatatactgaaatataatggccttataaggcaaa |
132 |
Q |
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| T |
37073847 |
aaacaaagcaatggaaataatagaagattgtatgctcatatagtaaaagaaagaagaaagcaagaacatctactcaaatataatggcct--taaggcaag |
37073750 |
T |
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| Q |
133 |
ctaaagcgattgtt |
146 |
Q |
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| T |
37073749 |
ctaaatcgattgtt |
37073736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 37077347 - 37077262
Alignment:
| Q |
167 |
ccattatactaagaaccctaaaaaccacatcataatactgtatacaaggtaggaaaagaaaatacacaatccagtcacagaaacat |
252 |
Q |
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| T |
37077347 |
ccattatactaagaacaataaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcctgtcataaaaacat |
37077262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 37493197 - 37493271
Alignment:
| Q |
167 |
ccattatactaagaaccctaaaaaccacatcataatactgtatacaaggtaggaaaagaaaatacacaatccagt |
241 |
Q |
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| T |
37493197 |
ccattatactaagaacattaaaaacaaccttataatactatgtataatgaaggaaaagaaaatacacaatccagt |
37493271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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