View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_69 (Length: 377)
Name: NF20151_low_69
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 53540493 - 53540842
Alignment:
| Q |
18 |
aaaataatgtgaagttctgcggaaactaacttttgcttttcttaaccaatttataagatgatgttgaagatgaagacgaagtagatggagccaacgacac |
117 |
Q |
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| T |
53540493 |
aaaataatgtgaagttctgcggaaactaacttttgcttttcttaaccaatttataagatgatgttgaagatgaagacgaagtagatggagccaatgacac |
53540592 |
T |
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| Q |
118 |
aggttatttttaaactttctaccttttgcagcataaagaaaatttgtgtggaaaattatgttaacaagtctcatatcaaactagcatatgagatatgtat |
217 |
Q |
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| T |
53540593 |
aggttatttttaaactttctaccttttgcagcataaagaaaatttgtttggacaattatgttaacaagtctcatatcaaattagcatatgagatatgtat |
53540692 |
T |
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| Q |
218 |
cagagcaaacttatgtgtatgcaaatttaacgcagattactttcaagtgggagagccacgttttaattgtgaatcatgtggtgcattaatgtggtatgag |
317 |
Q |
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| T |
53540693 |
cacagcaaacttatgtgtatgcaaatttaacgcagattactttcaagtgggagagccacgttttgtttgtgaatcatgtggtgcattaatgtggtatgag |
53540792 |
T |
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| Q |
318 |
gaaagggttggaaaacatcgtgacacatcaaatcccgaatttagtctgtg |
367 |
Q |
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| T |
53540793 |
gaaagggttggaaaacatcgtgacacatcaaatcccgaatttagtctgtg |
53540842 |
T |
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