View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_low_70 (Length: 371)

Name: NF20151_low_70
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_low_70
NF20151_low_70
[»] chr6 (1 HSPs)
chr6 (50-342)||(7692497-7692791)
[»] chr8 (1 HSPs)
chr8 (50-362)||(10016745-10017060)
[»] chr4 (1 HSPs)
chr4 (50-362)||(26414693-26415008)
[»] scaffold0024 (1 HSPs)
scaffold0024 (50-362)||(8122-8438)
[»] chr7 (2 HSPs)
chr7 (9-149)||(13855036-13855176)
chr7 (209-362)||(13855175-13855331)
[»] chr3 (2 HSPs)
chr3 (208-269)||(10474187-10474248)
chr3 (120-185)||(10474253-10474317)
[»] chr1 (1 HSPs)
chr1 (103-161)||(5976999-5977057)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 50 - 342
Target Start/End: Complemental strand, 7692791 - 7692497
Alignment:
Q  50 ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7692791 ttcacaacttattacatgtgaaaaatgaaaaggattgtgttgtctgtgttgataataatggaagaagtagaagaagaaagagttgagatttgtggagctg 7692692  T
Q  150 attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgtatgctgatgtgcaatgactatgatcataa 249  Q
    ||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  7692691 attgaggaaaagctctcgatcgggaggaattgtggtggactactagttccagcaggagatgtgatgtgtgtatgctgatgtgcaatgactatggtcataa 7692592  T
Q  250 agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaattgagagaga 342  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  7692591 agtagtgatttgaaaatataaaatattaaaaatagatataaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagaga 7692497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 50 - 362
Target Start/End: Original strand, 10016745 - 10017060
Alignment:
Q  50 ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg 149  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10016745 ttcacaacttgttacatgtgaaaaatgaaaaggattgtgttgtatgaattgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctt 10016844  T
Q  150 attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgtatgctgatgtgcaatgactatgatcataa 249  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||| ||||||    
T  10016845 attgaggaaaagctctcgatctgaaggaattgtggtggactactagttccagcaggagatgtgatatgtgtattctgatgtgcaatgactatggtcataa 10016944  T
Q  250 agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaatt--gagagagacaa 345  Q
    | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||    
T  10016945 aatagtgatttgaaaatataaaatattaaaaatagatataaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaa 10017044  T
Q  346 caccgtcttccctatgc 362  Q
    || ||||||||||||||    
T  10017045 ca-cgtcttccctatgc 10017060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 50 - 362
Target Start/End: Complemental strand, 26415008 - 26414693
Alignment:
Q  50 ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg 149  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||    
T  26415008 ttcacaacttattacatgtgaaaaatgaaaaggattgtgttgtctgtgttgataataaaggaagaaatagaagatgaaatatttgagatttgtggagctg 26414909  T
Q  150 attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgtatgctgatgtgcaatgactatgatcataa 249  Q
    |||||||||||||||||| || ||| ||||||||||| |||| |||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||    
T  26414908 attgaggaaaagctctcgttccgaaggaattgtggtgtactagtagttccagcaggagatatgatgtgtgtatgctgatgtgcaatgactatggtcataa 26414809  T
Q  250 agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaatt--gagagagacaa 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||    
T  26414808 agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaa 26414709  T
Q  346 caccgtcttccctatgc 362  Q
    || ||||||||||||||    
T  26414708 ca-cgtcttccctatgc 26414693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 50 - 362
Target Start/End: Original strand, 8122 - 8438
Alignment:
Q  50 ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg 149  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8122 ttcacaacttgttacatgtgaaaaatgaaaaggattgtgttgtatgaattgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctt 8221  T
Q  150 attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagat-gtgaggtgtgtatgctgatgtgcaatgactatgatcata 248  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||  ||||||| ||||||||||||||||||| |||||    
T  8222 attgaggaaaagctctcgatctgaaggaattgtggtggactactagttccagcaggagatggtgatatgtgtattctgatgtgcaatgactatggtcata 8321  T
Q  249 aagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaatt--gagagagaca 344  Q
    || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||||||||||||||  ||||||||||    
T  8322 aaatagtgatttgaaaatataaaatattaaaaatagatataaattaattccttgaaattgaatagtttttgagagttccaagacaattgagagagagaca 8421  T
Q  345 acaccgtcttccctatgc 362  Q
    ||| ||||||||||||||    
T  8422 aca-cgtcttccctatgc 8438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 13855036 - 13855176
Alignment:
Q  9 cggaataacagtgaggaagaaaggttttggatttgtaggtattcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  13855036 cggaataacagtgaggaagaaaggttttggatttgtaggtattcacagcttatgacatgtgaaaaatgaaaaggattgtgttgtctgtgttgataataaa 13855135  T
Q  109 ggaagaagtagaagaagaaagagttgagatttgtggagctg 149  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  13855136 ggaagaagtagaagaagaaagagttcagatttgtggagctg 13855176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 209 - 362
Target Start/End: Original strand, 13855175 - 13855331
Alignment:
Q  209 tgtgaggtgtgtatgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattg 308  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13855175 tgtgatgtgtgtatgctgatgtgcaatgactatggtcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttggaattg 13855274  T
Q  309 aatagttttt--gagttccaagacaatt--gagagagacaacaccgtcttccctatgc 362  Q
    ||||||||||  ||||||||||||||||  ||||||||||||| ||||||||||||||    
T  13855275 aatagtttttgagagttccaagacaattgagagagagacaaca-cgtcttccctatgc 13855331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 10474248 - 10474187
Alignment:
Q  208 atgtgaggtgtgtatgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatata 269  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  10474248 atgtgatgtgtgtatgctgatgtgcaatgactatggttataaagtagtgatttgaaaatata 10474187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 10474317 - 10474253
Alignment:
Q  120 aagaagaaagagttgagatttgtggagctgattgaggaaaagctctcgatctgaaagaattgtggt 185  Q
    |||||||||||||| |||||||||||||||||||||||| || ||  |||||||| ||||||||||    
T  10474317 aagaagaaagagtt-agatttgtggagctgattgaggaacagttcctgatctgaaggaattgtggt 10474253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 5977057 - 5976999
Alignment:
Q  103 aataaaggaagaagtagaagaagaaagagttgagatttgtggagctgattgaggaaaag 161  Q
    ||||||||||||| ||||||||||||||||| |||| | ||||||||| ||||||||||    
T  5977057 aataaaggaagaaatagaagaagaaagagtttagatctatggagctgagtgaggaaaag 5976999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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