View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_low_71 (Length: 367)
Name: NF20151_low_71
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_71 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 5849152 - 5849501
Alignment:
| Q |
1 |
cggtgctatttctaagaacttgattatggatgcatttttcctttgttatagtaagcttctataccttcttgttggctgacatttatttcaaccctcagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5849152 |
cggtgctatttctaagaacttgattatggatgcatttttcctttgttatagtaagcttctataccttcttgttggctgacatttatttcaaccctcagat |
5849251 |
T |
|
| Q |
101 |
cataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattgcgttcataataggactaaccgttcttgtattggttacatcagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5849252 |
cataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattgcgttcataataggactaaccgttcttgtattggttacatcagcat |
5849351 |
T |
|
| Q |
201 |
atagagagaaaattggtaagccaggtgaaaaagttatgataattaaatgtcaaatatttttgatttaattaaatagtactcaaagtagagttaaatgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5849352 |
atagagagaaaattggtaagccaggtgaaaaagttatgataattaaatgtcaaatatttttgatttaattaaatagtactcaaagtagagttaaatgtta |
5849451 |
T |
|
| Q |
301 |
caacttacaatgaattttaaagtttcattgatttgtcactttactttgtt |
350 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5849452 |
caacttacaatgaatttcaaagtttcgttgatttgtcactttactttgtt |
5849501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 49 - 267
Target Start/End: Complemental strand, 5454745 - 5454532
Alignment:
| Q |
49 |
tagtaagcttctataccttcttgttgg-ctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcagg |
147 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||||||| || ||||||| |||| ||||| ||||||| |
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|
| T |
5454745 |
tagtaagcttctataccttcttgtttgactgacattaacttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcagg |
5454646 |
T |
|
| Q |
148 |
agtcattgcgttcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaa |
247 |
Q |
| |
|
||| ||||| |||| |||||||||| |||||||||||||| ||||||||||||| | |||| ||||||||||| ||||||||||| || |||| |
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|
| T |
5454645 |
agttattgcattcactataggactaatagttcttgtattggtcacatcagcatataaaaagaagattggtaagcc------aaaagttatgaaaagtaaa |
5454552 |
T |
|
| Q |
248 |
tgtcaaatatttttgattta |
267 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
5454551 |
tttcaaatatttttgattta |
5454532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 267
Target Start/End: Complemental strand, 5484497 - 5484307
Alignment:
| Q |
77 |
tgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattgcgttcataataggactaaccg |
176 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||| | ||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||| ||| |
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|
| T |
5484497 |
tgacatttacttcaacctacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggactatccg |
5484398 |
T |
|
| Q |
177 |
ttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaatgtcaaatatttttgattta |
267 |
Q |
| |
|
|||||||| |||| | |||||||||||| |||| |||||||||| |||||||||| ||||||| ||||| |||||||||| ||||||| |
|
|
| T |
5484397 |
ttcttgtaatggtcatatcagcatataggaagaagcatggtaagccaagtgaaaaagtaatgataagtaaatctcaaatatttatgattta |
5484307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 264
Target Start/End: Complemental strand, 5489932 - 5489724
Alignment:
| Q |
56 |
cttctataccttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattg |
155 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||||| || ||||||| |||| ||||| |||||||||| |||| |
|
|
| T |
5489932 |
cttctataccttcttgttgactgacattaacttcaaccctcagatcataaagagaataagcggaaattgaagcttgctgggactcttgcaggagttattg |
5489833 |
T |
|
| Q |
156 |
cgttcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaatgtcaaat |
255 |
Q |
| |
|
| ||||| |||| ||||| |||||| || ||| | |||||| |||||||| |||| ||||||||||| |||||||| | |||| || ||||| |||||| |
|
|
| T |
5489832 |
cattcattatagtactaagcgttctcgttttgatcacatcaacatatagaaagaagcttggtaagccaagtgaaaaaatcatgacaagtaaatctcaaat |
5489733 |
T |
|
| Q |
256 |
atttttgat |
264 |
Q |
| |
|
|||| |||| |
|
|
| T |
5489732 |
atttatgat |
5489724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 5502754 - 5502582
Alignment:
| Q |
59 |
ctataccttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattgcgt |
158 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||| ||||| |||||||||| |||| | |
|
|
| T |
5502754 |
ctataccttcttgttgactgacattaatttcaaccctcagatcataaaaagaataagcggaaattgaagcttgctgggactcttgcaggagttgttgcat |
5502655 |
T |
|
| Q |
159 |
tcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaa |
231 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | ||||||| ||||||| |||| |||||||||| ||||||| |
|
|
| T |
5502654 |
tcattataggactaaccgttctcgtattgatcacatcagtatatagaaagaagcttggtaagccgagtgaaaa |
5502582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 68 - 231
Target Start/End: Original strand, 5854414 - 5854577
Alignment:
| Q |
68 |
cttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattgcgttcataatag |
167 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||| | || || |||| |
|
|
| T |
5854414 |
cttgttgactaacatttatttcaatcctcagatcataaaaagaataagaggaacttgaagcatgctgggactgttgcaggagttattacatttattatag |
5854513 |
T |
|
| Q |
168 |
gactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaa |
231 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
5854514 |
gactaatcgttcttgtattggtcacatcagcatataaaaagaagcttggtaagccaggtgaaaa |
5854577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 267
Target Start/End: Complemental strand, 20343396 - 20343179
Alignment:
| Q |
50 |
agtaagcttctataccttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggag |
149 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| | || ||| | |||| || | |
|
|
| T |
20343396 |
agtaagcttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttgaagctttctgggatttttgccgggg |
20343297 |
T |
|
| Q |
150 |
tcattgcgttcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaatg |
249 |
Q |
| |
|
| ||||| || || ||||||||| ||||||| |||||||| || |||||||||||| |||| |||||||| || ||| | |||||||||||| ||| | |
|
|
| T |
20343296 |
ttattgcatttattataggactagccgttctcgtattggtcacgtcagcatatagaaagaagcttggtaagacaagtgcacaagttatgataaataattc |
20343197 |
T |
|
| Q |
250 |
tcaaatatttttgattta |
267 |
Q |
| |
|
| || ||||| ||||||| |
|
|
| T |
20343196 |
ttaattatttatgattta |
20343179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 259
Target Start/End: Complemental strand, 5446162 - 5445958
Alignment:
| Q |
49 |
tagtaagcttctataccttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcagga |
148 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||||||||| || ||||||| |||| ||||| |||||||| |
|
|
| T |
5446162 |
tagtaagcttctataccagcttgttgactgacattaacttcaaccctcagatcataaaaagaataagcagaaattgaagcttgctgggactcttgcagga |
5446063 |
T |
|
| Q |
149 |
gtcattgcgttcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaat |
248 |
Q |
| |
|
|| |||| ||||| |||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||| ||||||||||| || ||||| |
|
|
| T |
5446062 |
gttgttgcattcattataggactaaacgttcttgtattggtcacatcagtgtatagaaagaagcttggtaagcc------aaaagttatgacaagtaaat |
5445969 |
T |
|
| Q |
249 |
gtcaaatattt |
259 |
Q |
| |
|
|||||||||| |
|
|
| T |
5445968 |
ctcaaatattt |
5445958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 263
Target Start/End: Original strand, 5828424 - 5828617
Alignment:
| Q |
66 |
ttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcga-aacttgaagcgtgcttggactgttgcaggagtcattgcgttcataa |
164 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||| ||| || ||||||| || | ||||| |||||||||| ||||| ||||| | |
|
|
| T |
5828424 |
ttcttgttgactgacatttacttcaaccctcagatcataaaaagaataa-cgagaagttgaagcttgttgggactcttgcaggagttattgcattcatta |
5828522 |
T |
|
| Q |
165 |
taggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaatgtcaaatatttttga |
263 |
Q |
| |
|
| ||||||| |||||| ||||||| ||||||||||||||| |||| ||||||||||| |||||| |||| |||||| || |||||||||||||| |
|
|
| T |
5828523 |
ttggactaatcgttctggtattggccacatcagcatatagaaagaagcttggtaagccaagtgaaagagttgtgataaata----tcaaatatttttga |
5828617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 284
Target Start/End: Original strand, 5802805 - 5803037
Alignment:
| Q |
49 |
tagtaagcttctataccttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcagga |
148 |
Q |
| |
|
|||||||||| ||| ||| || |||| || || | || ||||||| ||||||||||||||||||||| | || |||||||||| ||||| |||||||| |
|
|
| T |
5802805 |
tagtaagcttatatgcctgctagttgactcacctgtacttcaaccttcagatcataaaaagaataagaggaatttgaagcgtgtcgggactcttgcagga |
5802904 |
T |
|
| Q |
149 |
gtcattgcgttcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaat |
248 |
Q |
| |
|
|| || ||| | || | ||||||||||||| ||||| |||||||||| |||| |||| |||||||||||| |||||||||||||||| || | |
|
|
| T |
5802905 |
gtttcggcattcgttatgctattaaccgttcttgttttggtcacatcagcatctagaaagaagcttggtaagccagctgaaaaagttatgata---aact |
5803001 |
T |
|
| Q |
249 |
gtcaaatatttttgatttaattaaatagtactcaaa |
284 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| |
|
|
| T |
5803002 |
ctcaaatatttatgatttgcttaaatagtactcaaa |
5803037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 5525567 - 5525401
Alignment:
| Q |
52 |
taagcttctataccttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtc |
151 |
Q |
| |
|
||||| |||||| || ||||||| |||||||||| ||||||| ||||||||||||||||||||| | |||| ||||| |||| ||||||| |||||| |
|
|
| T |
5525567 |
taagcatctatatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaactcgaagcttgctgggactgtcgcagga--- |
5525471 |
T |
|
| Q |
152 |
attgcgttcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaa |
230 |
Q |
| |
|
|| |||||||||| |||||| ||||||| ||||||| ||||||| |||| ||||||||||| |||||| |
|
|
| T |
5525470 |
---------attataggactaattgttcttatattggtcacatcagtatatagaaagaagcttggtaagccaagtgaaa |
5525401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 259
Target Start/End: Original strand, 25809650 - 25809854
Alignment:
| Q |
49 |
tagtaagcttctataccttcttgttggctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcagga |
148 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||||||||| || ||||||| |||| ||||| |||||||| |
|
|
| T |
25809650 |
tagtaagcttctataccagcttgttgactgacattaacttcaaccctcagatcataaaaagaataagcagaaattgaagcttgctgggactcttgcagga |
25809749 |
T |
|
| Q |
149 |
gtcattgcgttcataataggactaaccgttcttgtattggttacatcagcatatagagagaaaattggtaagccaggtgaaaaagttatgataattaaat |
248 |
Q |
| |
|
|| |||| ||||| |||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||| ||||||||||| || ||||| |
|
|
| T |
25809750 |
gttgttgcattcattataggactaaacgttcttgtattggtcacatcagtgtatagaaagaagcttggtaagcc------aaaagttatgacaagtaaat |
25809843 |
T |
|
| Q |
249 |
gtcaaatattt |
259 |
Q |
| |
|
|||||||||| |
|
|
| T |
25809844 |
ctcaaatattt |
25809854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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