View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_73 (Length: 361)
Name: NF20151_low_73
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 43 - 350
Target Start/End: Original strand, 9394764 - 9395071
Alignment:
| Q |
43 |
taactcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcagccggaataggttctccgacgaaacatgcatcatcggagttaatcga |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
9394764 |
taactcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcagccggaataggttctccgacgaaacatgcatcgtcggagttaaccga |
9394863 |
T |
|
| Q |
143 |
agattgcttcgctttctttcttctagaaggaagaagcgaaaccagtagttcttcttcgacgggattaaccggagattttttggatttcttccgttgagaa |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
9394864 |
agattgcttcgctttctttcttctagaaggaagaagcgaaacctgtagttcttcttcgacgggattaaccggagattttttggatttcttccatttagaa |
9394963 |
T |
|
| Q |
243 |
gaatgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaaggagaaaataagtgcttgttttttgttaggag |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9394964 |
gaatgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaaggagaaaataagtacttgttttttgttaggag |
9395063 |
T |
|
| Q |
343 |
aagagaga |
350 |
Q |
| |
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|||||||| |
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| T |
9395064 |
aagagaga |
9395071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 44 - 350
Target Start/End: Original strand, 31944273 - 31944576
Alignment:
| Q |
44 |
aactcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcagccggaataggttctccgacgaaacatgcatcatcggagttaatcgaa |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| || | ||| |
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| T |
31944273 |
aactcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcggccggaataggttctccgatgaagcatgcatcatcggaattgaccgac |
31944372 |
T |
|
| Q |
144 |
gattgcttcgctttctttcttctagaaggaagaagcgaaaccagtagttcttcttcgacgggattaaccggagattttttggatttcttccgttgagaag |
243 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
31944373 |
gattgcttcgctttctttcttctggaaggaagaagagaaaccagt---tcttcttcaacgggaataaccggagatattttggatttcttccgttgagaag |
31944469 |
T |
|
| Q |
244 |
aatgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaaggagaaaataagtgcttgttttttgttaggaga |
343 |
Q |
| |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
31944470 |
aacgaggaacgacgtcgtcttgtttgggagatttacgaacgcgttttttaggcattattgaggtgaaagagaaaataagtgcttattttttgttaggaga |
31944569 |
T |
|
| Q |
344 |
agagaga |
350 |
Q |
| |
|
||||||| |
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|
| T |
31944570 |
agagaga |
31944576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 43 - 350
Target Start/End: Original strand, 1342321 - 1342616
Alignment:
| Q |
43 |
taactcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcagccggaataggttctccgacgaaacatgcatcatcggagttaatcga |
142 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1342321 |
taactcactcgttcttggtgtaccggtgaggccatttcttttgtgcttcatcagccggaataggttctccgacgaaacatgcatcatcggagttaaccga |
1342420 |
T |
|
| Q |
143 |
agattgcttcgctttctttcttctagaaggaagaagcgaaaccagtagttcttcttcgacgggattaaccggagattttttggatttcttccgttgagaa |
242 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||| | ||||||||||| |||| |
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| T |
1342421 |
agattgcttcgatttctttcttctagaaggaagaagcgaaacc---agttcttcttc---------aactggagattgtttagctttcttccgtttagaa |
1342508 |
T |
|
| Q |
243 |
gaatgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaaggagaaaataagtgcttgttttttgttaggag |
342 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||| |||| |||||| |||| |||||||||||||| |
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| T |
1342509 |
gaatgaggaacaacgtcgtcttgattggaagatttgcgaacgcgtttttgaggcattgttaaggtgaatgagagaataagcgcttattttttgttaggag |
1342608 |
T |
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