View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_74 (Length: 358)
Name: NF20151_low_74
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 129 - 343
Target Start/End: Complemental strand, 33789245 - 33789030
Alignment:
| Q |
129 |
gtggagttatcacggtaattttatattttcactttctataaaaagaacatgaaattgtga-tgaatatgggtgaaccatgccgctaagacattaatatac |
227 |
Q |
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| T |
33789245 |
gtggagttatcacggtaattttatattttcactttctataaaaagaacatgaaattgtgaatgaatatgggtgaaccatgccgctaagacattaatatac |
33789146 |
T |
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| Q |
228 |
atagctacgtgccatttcttgtattaattttattttatatgcacattttagttacgtatgcatgcagaaaaaccaagattggatcaaattaaaatgttaa |
327 |
Q |
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| T |
33789145 |
atagctacgtgccatttcttgtattaattttattttatatgcacattttagttacgtatgcatgcagaaaaaccaagattggatcaaattaaaatgttaa |
33789046 |
T |
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| Q |
328 |
ctagctatcagttttt |
343 |
Q |
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|||||||||||||||| |
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| T |
33789045 |
ctagctatcagttttt |
33789030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33789379 - 33789348
Alignment:
| Q |
1 |
aattatttttagaaaattatttttcatccatg |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33789379 |
aattatttttagaaaattatttttcatccatg |
33789348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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