View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_77 (Length: 347)
Name: NF20151_low_77
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 51 - 326
Target Start/End: Original strand, 7652075 - 7652350
Alignment:
| Q |
51 |
aatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga |
150 |
Q |
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| T |
7652075 |
aatagagaatactttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga |
7652174 |
T |
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| Q |
151 |
ggcattgaaataaaaggtggtggcggaagtggtggagtacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg |
250 |
Q |
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| T |
7652175 |
ggcattgaaataaaaggtggtggcggaagtgttggaggacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg |
7652274 |
T |
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| Q |
251 |
gtggtggcgacggtggaaataatcagagtcagaatcaaggtggaatgccagagggtaaaaatggaaataagaatgt |
326 |
Q |
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| T |
7652275 |
gtggtggcgaaggtggaaataatcagattcagaatcaaggtggaatgccagaaggtaaaaatggaaataagaatgt |
7652350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 7657490 - 7657560
Alignment:
| Q |
59 |
atcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaag |
129 |
Q |
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| T |
7657490 |
atcctttgaataagatgaaactacctatggggggtaatggtcctgctcacatgatgatgaatgctcaaaag |
7657560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 7657639 - 7657695
Alignment:
| Q |
238 |
ggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtgga |
294 |
Q |
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| T |
7657639 |
ggaaagaaaggtggtggtggtggtggcggaaataatcagagtcagaatcaaggtgga |
7657695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 7657725 - 7657763
Alignment:
| Q |
288 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
326 |
Q |
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| T |
7657725 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
7657763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 48572934 - 48572896
Alignment:
| Q |
219 |
tggtggaaatgggaatggaggaaagaaaggtggtggtgg |
257 |
Q |
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| T |
48572934 |
tggtggaaatggcaatggaggaaagaaaggtggtggtgg |
48572896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 48538612 - 48538558
Alignment:
| Q |
223 |
ggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcaga |
277 |
Q |
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| T |
48538612 |
ggaaatggcaatggaggaaagaaaggtggcggtggtggtggaggaaataatcaga |
48538558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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