View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_low_79 (Length: 345)
Name: NF20151_low_79
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_79 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 24837854 - 24837516
Alignment:
| Q |
10 |
agtagcaaaggaccaaaagccaccgtaatcagtaagttaccttacctcgagtggatgcagaatgcgattggtggtttgagaaaaccagttgcacgtctaa |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837854 |
agtaacaaaagaccaaaagccaccgtaatcagtaagttaccttacctcgagtcgatgcagaatgcgattggtggtttgagaaaaccagttgcacgtctaa |
24837755 |
T |
|
| Q |
110 |
gagtgaaggagaggtgaaagagtgtgggagttccagtaagagaggactgcagcagcaccaagagttcctcaatatttagcttttcacagttggtcatcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837754 |
gagtgaaggagaggtgaaagagtgtggtagttccagtatgagaggactgcagcagcaccaagagttcctcaatatttagcttttcacagttggtcatcat |
24837655 |
T |
|
| Q |
210 |
agtgatcatgatgcactcaattatagacattcagccctaattagaaaaatggccactttgcaccattatcttcaagaaatatc---ttcnnnnnnnnnng |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
24837654 |
agtgatcatgatgcactcaattatagacatttagccctaattagaaaaatggccactttgcaccattatcttcaagaaatatcttttttttttttttttg |
24837555 |
T |
|
| Q |
307 |
aaactgcgaaatattattcacgtcgagaatgtgcaagac |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837554 |
aaactgcgaaatattattcacgtcgagaatgtgcaagac |
24837516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 36532202 - 36532163
Alignment:
| Q |
306 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36532202 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagac |
36532163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 28110678 - 28110717
Alignment:
| Q |
306 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110678 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagac |
28110717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 27844258 - 27844228
Alignment:
| Q |
315 |
aaatattattcacgtcgagaatgtgcaagac |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27844258 |
aaatattattcacgtcgagaatgtgcaagac |
27844228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 6516235 - 6516274
Alignment:
| Q |
306 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagac |
345 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6516235 |
gaaactgcgaaatattattcacgttgagaatgtgcaagac |
6516274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University