View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_8 (Length: 624)
Name: NF20151_low_8
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 170 - 606
Target Start/End: Complemental strand, 7619671 - 7619234
Alignment:
| Q |
170 |
ctactttgcgtaaagattatagatttttcttctttgtttaaaccaataattatgttctgttgtcatctaatataataatacttaagcttatttatatttt |
269 |
Q |
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| T |
7619671 |
ctactttacgtaaagattatagatttttcttctttgtttaaaccaataattatgttttgttgtcatctaatataataatacttaagcttatttatatttt |
7619572 |
T |
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| Q |
270 |
atatnnnnnnnnggacaagatgacccctctaatttatttatcatttatgacttacacagtgagtaaattccannnnnnngtagtcttcccaagtcagttc |
369 |
Q |
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| T |
7619571 |
atataaaaaaa-ggacaagatgacccctctaatttatttatcatttatgacttacacagtgagtaaattccatttttttgtagtcttcccaagtcagttc |
7619473 |
T |
|
| Q |
370 |
tgtttcccctgcttgnnnnnnngctctggcgatttctttgtgttcttcctgttgtttttccacagtaaaaaacaaaacataattattactacagtaaaat |
469 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7619472 |
tgtttcccctgcttgtttttttgctctggcgatttctttgtgttcttcctgttgtttttccacagtaaaaaacaaaacataattattactacagtaaaat |
7619373 |
T |
|
| Q |
470 |
tctcaacattttataagctagaagctgaagtgagaaagaacatgtatgtattctttggaaaactgaagcaccaacacttctcaaattaggtgtccg--ga |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
7619372 |
tctcaacattttataagctagaagctgaagtgagaaagaacatgtatgtattctttggaaaactgaagcacaaacacttctcaaattacgtgtccgacac |
7619273 |
T |
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| Q |
568 |
caccgacacaataccaaaaagtataattagtggtgtttg |
606 |
Q |
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| T |
7619272 |
caccgacacaataccaaaaaatataattagtggtgtttg |
7619234 |
T |
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