View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_80 (Length: 343)
Name: NF20151_low_80
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 333
Target Start/End: Original strand, 28297310 - 28297639
Alignment:
| Q |
4 |
aacatcgaaaggagactcagaatcaaggcaagaacggaccttatcaggaagtgtggacaggaaagctgatctgagagagtttaccgaattccggcgaatg |
103 |
Q |
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| T |
28297310 |
aacatcgaaaggagactcagaatcaaggcaagaacggaccttatcaggaagtgtggacaggaaagctgatctgagagagtttaccgaattccggcgaatg |
28297409 |
T |
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| Q |
104 |
attttggtggtctgaccgtcgtgtatggcggagagaagcggcctggtaggatccgaacccgaattcgcgtccatgttgtattaactaagataatgaaata |
203 |
Q |
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| T |
28297410 |
attttggtggtctgaccgtcgtgtatggcggagagaagcggcctggtaggatccgaacccgaattcccgtccatgttgtattaactaagataatgaaata |
28297509 |
T |
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| Q |
204 |
aacgcatgcaatactccaataaataacgaaaacgaattcacatgctcttaagtttttgatagtaactcatgtaataaagatactaaaaataataattctt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28297510 |
aacgcatgcaatactccaataaataacgaaaacgaattcacatgctcttaagtttttgatagtaactcatgtaataaagatactaaaaataataattctt |
28297609 |
T |
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| Q |
304 |
ttttgttggtatattctactaccaagtctt |
333 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28297610 |
ttttgttggtatattctactaccaagtctt |
28297639 |
T |
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