View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_86 (Length: 331)
Name: NF20151_low_86
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 50 - 313
Target Start/End: Complemental strand, 7652006 - 7651755
Alignment:
| Q |
50 |
ctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgaggccccttaagatct |
149 |
Q |
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| T |
7652006 |
ctctttaggcaaattgaccttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgagtccccttaagatct |
7651907 |
T |
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| Q |
150 |
tcaagtcctttcatctgctgaagttgttgcaactgttgttgaagctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttat |
249 |
Q |
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| T |
7651906 |
tcaagtcctttcatctgctgaagttgttg------------aagctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttat |
7651819 |
T |
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| Q |
250 |
ttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttg |
313 |
Q |
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| T |
7651818 |
ttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaatttg |
7651755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 50 - 310
Target Start/End: Complemental strand, 7657407 - 7657135
Alignment:
| Q |
50 |
ctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgaggccccttaagatct |
149 |
Q |
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| T |
7657407 |
ctcttcaggcaaattgaacttaacacctttcatatttgtattttgatttggtggtggcattttcatgttcatgtccttgaattgaggcaccttcagatct |
7657308 |
T |
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| Q |
150 |
tcaagtcctttcatctgctgaagttgttgc---------aactgttgttgaa---gctgttgttgaggattctgctcttgttgtccacctccctttggtt |
237 |
Q |
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| T |
7657307 |
ccaaatcctttaatatgttgaagttgttgcagctgttgtaactgttgctgaagctgctgttgttgaggattttgtccttgttggctaccaccctttggct |
7657208 |
T |
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| Q |
238 |
ggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaat |
310 |
Q |
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| T |
7657207 |
gattttggttatttccaggacccttttgccccttgttgttattgtttcctccaccaccttttccattgtcaat |
7657135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 48539049 - 48539089
Alignment:
| Q |
156 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
196 |
Q |
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| T |
48539049 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48539089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 48573304 - 48573344
Alignment:
| Q |
156 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
196 |
Q |
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| T |
48573304 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48573344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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