View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_9 (Length: 614)
Name: NF20151_low_9
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 323 - 597
Target Start/End: Original strand, 2504653 - 2504927
Alignment:
| Q |
323 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
422 |
Q |
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| T |
2504653 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
2504752 |
T |
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| Q |
423 |
tttctacttcactagggtttaaactgtaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccgtgctagtc |
522 |
Q |
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| T |
2504753 |
tttctacttcactagggtttaaactctaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccttgctagtc |
2504852 |
T |
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| Q |
523 |
ttctacttttgattcttgtatatcgtcttttcatatattgcatacatttgatgaaacattctctgatgcaatatt |
597 |
Q |
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| T |
2504853 |
ttctacttttgattcttatatatcgtcttttcatatattgcatacatttgatgaaccattctctgatgcaatatt |
2504927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 2504353 - 2504587
Alignment:
| Q |
18 |
gaaaagtgggcattagattattgttttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaaataaggaggaagagg |
117 |
Q |
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| T |
2504353 |
gaaaagtgggcattagatcattggtttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaaataaggaggaagagg |
2504452 |
T |
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| Q |
118 |
tagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgactagtgttgatcatgt |
217 |
Q |
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| T |
2504453 |
tagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgactagtgttgatcctgt |
2504552 |
T |
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| Q |
218 |
actattattgtactgtataaggcactttgatcttgtac |
255 |
Q |
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|| |||||||||| |||||||||||||||||||||| |
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| T |
2504553 |
ac---tattgtactgcataaggcactttgatcttgtac |
2504587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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