View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_low_95 (Length: 317)
Name: NF20151_low_95
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_95 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 32600594 - 32600878
Alignment:
| Q |
13 |
aatatgtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcga |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
32600594 |
aataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaa |
32600693 |
T |
|
| Q |
113 |
gcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatgcat |
212 |
Q |
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||||||||||||||||| ||| ||||||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32600694 |
gcatatcaggatctaat----atccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcat |
32600789 |
T |
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| Q |
213 |
aacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagt |
301 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600790 |
aacattactagtgaggttaattaattaccattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagt |
32600878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 32590146 - 32590430
Alignment:
| Q |
13 |
aatatgtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcga |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
32590146 |
aataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaa |
32590245 |
T |
|
| Q |
113 |
gcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatgcat |
212 |
Q |
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||||||||||||||||| ||| ||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||| |
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| T |
32590246 |
gcatatcaggatctaat----atccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcat |
32590341 |
T |
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| Q |
213 |
aacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagt |
301 |
Q |
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|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
32590342 |
aaaattattagtgaggttaattaattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagt |
32590430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 24883774 - 24883687
Alignment:
| Q |
39 |
caccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatct |
126 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
24883774 |
caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 24883595 - 24883555
Alignment:
| Q |
237 |
ttaccattccatcctccaggtccagcataagatgcccattt |
277 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||| |
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| T |
24883595 |
ttaccattccatcctccaggtccagcgtaagaagcccattt |
24883555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 34577906 - 34578190
Alignment:
| Q |
13 |
aatatgtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcga |
112 |
Q |
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|
|||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| | |
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| T |
34577906 |
aatatgtatataaaaagtgtttcatgtaccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaa |
34578005 |
T |
|
| Q |
113 |
gcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatgcat |
212 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34578006 |
gcatatcaggatctaat----atccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcat |
34578101 |
T |
|
| Q |
213 |
aacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagt |
301 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
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| T |
34578102 |
aacattactagtgaggttaattaattaccattccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagt |
34578190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 34593767 - 34593856
Alignment:
| Q |
40 |
accttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaat |
129 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||| |
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| T |
34593767 |
accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaat |
34593856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 34593907 - 34593956
Alignment:
| Q |
228 |
gttagttaattaccattccatcctccaggtccagcataagatgcccattt |
277 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34593907 |
gttaattaattaccattccatcctccaggtccagcatacgatgcccattt |
34593956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 27532418 - 27532378
Alignment:
| Q |
86 |
ttgtcattcctccatttccaacttcgagcatatcaggatct |
126 |
Q |
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||||||| |||||||||||||| || ||||||||||||||| |
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| T |
27532418 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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