View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_low_99 (Length: 313)
Name: NF20151_low_99
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_low_99 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 19651317 - 19651148
Alignment:
| Q |
9 |
aacataggagctaagaagttaaaaacttgaaaagaatacctgaacacaccaaaacaaataagcaagaatgctacaaattcctcaaacgtaaaacgtgtcg |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19651317 |
aacatagaagctaagaagttaaaaacttgaaaacaatacctgaacacaccaaaacaaataagcaagaatgctacaaattcctcaaacgtaaaacgtgtcg |
19651218 |
T |
|
| Q |
109 |
aaaacagttctgcaaccttatgttccaagaagttaataatcgattacaatttactacaagagcagttata |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19651217 |
aaaacagttctgcaaccttatgttccaagaagttaataatcgattacaatttactacaagagcagttata |
19651148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 19651098 - 19651027
Alignment:
| Q |
227 |
gaatcggctaaaaatttattggcttcaaacccaccccgagatgtgaataggcaaacaccaaaggaacaaact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19651098 |
gaatcggctaaaaatttattggcttcaaacccaccccgagatgtgaataggcaaacaccaaaggaacaaact |
19651027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 19490349 - 19490389
Alignment:
| Q |
21 |
aagaagttaaaa-acttgaaaagaatacctgaacacaccaa |
60 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
19490349 |
aagaagttaaaaaacttgaaaataatacctgaacacaccaa |
19490389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 126490 - 126530
Alignment:
| Q |
21 |
aagaagttaaaa-acttgaaaagaatacctgaacacaccaa |
60 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
126490 |
aagaagttaaaaaacttgaaaataatacctgaacacaccaa |
126530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 21224048 - 21224008
Alignment:
| Q |
21 |
aagaagttaaaaa-cttgaaaagaatacctgaacacaccaa |
60 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
21224048 |
aagaagttaaaaaacttgaaaataatacctgaacacaccaa |
21224008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 9825316 - 9825356
Alignment:
| Q |
21 |
aagaagttaaaa-acttgaaaagaatacctgaacacaccaa |
60 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
9825316 |
aagaagttaaaaaacttgaaaataatacctgaacacaccaa |
9825356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 18447004 - 18446964
Alignment:
| Q |
21 |
aagaagttaaaaa-cttgaaaagaatacctgaacacaccaa |
60 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
18447004 |
aagaagttaaaaaacttgaaaataatacctgaacacaccaa |
18446964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University