View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20152_low_1 (Length: 411)
Name: NF20152_low_1
Description: NF20152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20152_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 53452055 - 53451670
Alignment:
| Q |
1 |
tgctcacgatcaatacatttaccgccacgctaatgggttatactttcatattcttaaattgcatgattttaactttaaattgacacgtgtttcacatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53452055 |
tgctcacgatcaatacatttaccgccacgctaatgggttatactttcatattcttaaattgcatgattttaactttaaattgacacgtgtttcacatttt |
53451956 |
T |
|
| Q |
101 |
tt-agtttatgactgttttatgtgatcttgaaggttgtgtgttattggcttggctccttcacacattgcttttaaggatgaagatggaatcacatccgta |
199 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53451955 |
tttagtttatgactgttttatgtgattttgaaggttgtgtgttattggcttggctccttcacacattgcttttaaggatgaaggtggaatcacatccgta |
53451856 |
T |
|
| Q |
200 |
gatttcaatgttggaaagtctgatcgaaccgctgtcaaggtctctggaaagcggaagaaggtacactgcagcttttctttatttatgagtttatgactca |
299 |
Q |
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| T |
53451855 |
gatttcaatgttggaaagtctgatcgaaccgctgtcaaggtctctggaaagcggaagaaggtacactgcagcttttctttatttatgagtttatgactca |
53451756 |
T |
|
| Q |
300 |
caatatctttctttataatcagctgattaacatttgtgtaatttgttgtgtttcaaaaatttgtgttctaaaatggctttttccgt |
385 |
Q |
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| T |
53451755 |
caatatctttctttataatcagcttattaacatttgtgtaatttgttgtgtttcaaaaatttgtgttctaaaatggctttttccgt |
53451670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 348
Target Start/End: Original strand, 31053783 - 31054128
Alignment:
| Q |
2 |
gctcacgatcaatacatttaccgccacgctaatgggttatactttcatattcttaaattgcatgattttaactttaaattgacacgtgtttcacattttt |
101 |
Q |
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||||| ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |
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| T |
31053783 |
gctcatgatcaatacatttaccgccacactaatgg--tatagtttcatattcttaaattgcatgattttaacttcaaattgatatgtgtttcacatttt- |
31053879 |
T |
|
| Q |
102 |
tagtttatgactgttttatgtgatcttgaaggttgtgtgttattggcttggctccttcacacattgcttttaaggatgaagatggaatcacatccgtaga |
201 |
Q |
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|||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
31053880 |
tagtttattactgttttttgtgatctttaaggttgtctgttattggcttggctccttcacacattgcttttaatgatgaaggtggaatcacatccgtaga |
31053979 |
T |
|
| Q |
202 |
tttcaatgttggaaagtctgatcgaaccgctgtcaaggtctctggaaagcggaagaaggtacactgcagcttttctttatttatgagtttatgactcaca |
301 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||||| || ||| || |||||||| ||||||||||||||| |
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| T |
31053980 |
tttcaatgttggaaagtctgatcaaaccgctgtgaaggtctctgaaaagcggaaaaaggtacactacaacttgtccttatttataagtttatgactcaca |
31054079 |
T |
|
| Q |
302 |
atatc--tttctttataatcagctgattaacatttgtgtaatttgttgt |
348 |
Q |
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||||| ||||||||||||| ||||||||||||||| || |||||||| |
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| T |
31054080 |
atatctttttctttataatctgctgattaacatttgagtgctttgttgt |
31054128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 31054136 - 31054177
Alignment:
| Q |
342 |
ttgttgtgtttcaaaa-atttgtgttctaaaatggctttttc |
382 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
31054136 |
ttgttgtgtttcaaaacatttgtgttctgaaatggctttttc |
31054177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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