View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20153_high_1 (Length: 862)
Name: NF20153_high_1
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 299 - 844
Target Start/End: Complemental strand, 2785644 - 2785100
Alignment:
| Q |
299 |
attgaacataagaaaataactaagctcactttcccagaaatgattgtagtaactttaaaacaagcacaccctaaacattatcttttctcaacgtgaggac |
398 |
Q |
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| T |
2785644 |
attgaacataagaaaataactaagctcactttcccagaaatgattgtagtaactttaaaacaagcacaccctaaacattatcttttctcaacgtgaggac |
2785545 |
T |
|
| Q |
399 |
gttgatttaatggctcaggcgtttatggttaattgttttcatatcaaatcctctttatcttttgtaattccacaccnnnnnnncgttgataaaagtaaat |
498 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2785544 |
gttgatttaatgtctcaggtgtttatggttaattgttttcatatcaaatcctctttatcttttgtaattccacacctttttttggttgataaaagtaaat |
2785445 |
T |
|
| Q |
499 |
ccactcttttgtcatgtttccttcatctctttattattcgtacacatttcttattagnnnnnnnnnnnnnnnnnnnnnnnncaatttagattcatgtctt |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2785444 |
ccactcttttgtcatgtttccttcatctctttattattcgtacacatttcttattagttttttacattttgtttttgttttcaatttagattcatgtctt |
2785345 |
T |
|
| Q |
599 |
tgcccactactccaatgcgcacatgtgaaatagtcttgcaccaaagtctataaacaagtttattttctagcattagattaataataatcacattatattt |
698 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785344 |
tgcccaatactccaatgcgcacatgtgaaatagtcttgcaccatagtctataaacaagtttattttctagcattagattaataataatcacattatattt |
2785245 |
T |
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| Q |
699 |
catttgatctaatgatgtaatttgctgattccaatgatataaataaatttatctatgatacaagatttatctcacttgacacttgtacatcataaaatga |
798 |
Q |
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| T |
2785244 |
catttgatctaataatgtaatttgctgatt-caatgatataaacaaatttatctatgatacaagatttatcccacttgacacttgtacatcataaaatga |
2785146 |
T |
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| Q |
799 |
tgttatatctcatacaagatttatcccacgttatatttcatttgat |
844 |
Q |
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| T |
2785145 |
tgttatatctcataaaagatttatcccacattatatttcatttgat |
2785100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 2785797 - 2785688
Alignment:
| Q |
146 |
cttgcttgtctttaaatttccattggttttgtcttaaagtttcttgagcttagtttttggcctcttgaatgatactttcttattattgctcttccacact |
245 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785797 |
cttgtttgtctttaaatttccattggttttgtcttaaagtttcttgagctca-tttttggcctcttgaatgatactttcttattattgctcttccacact |
2785699 |
T |
|
| Q |
246 |
tgaaagaacaa |
256 |
Q |
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||||||||||| |
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| T |
2785698 |
tgaaagaacaa |
2785688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 2785968 - 2785876
Alignment:
| Q |
26 |
gaaatcatagaccttttattagggcaatttgatgttatgtgacctcttcctaaacatttgaaatatttaattgaggaatgagaagaactagga |
118 |
Q |
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| T |
2785968 |
gaaatcatagaccttttattagggcaatttgatgttatgtgacctcttcctaaacatttgaaatatttaattgaggaatgagaataactagga |
2785876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 21798523 - 21798431
Alignment:
| Q |
26 |
gaaatcatagaccttttattagggcaatttgatgttatgtgacctcttcctaaacatttgaaatatttaattgaggaatgagaagaactagga |
118 |
Q |
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| T |
21798523 |
gaaatcatagaccttttattagggcaatttgatgctatgtgacctcttcccaaacatttgaaacatttaattgaggaatgagaagaattagga |
21798431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 27742534 - 27742442
Alignment:
| Q |
26 |
gaaatcatagaccttttattagggcaatttgatgttatgtgacctcttcctaaacatttgaaatatttaattgaggaatgagaagaactagga |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||| |
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| T |
27742534 |
gaaatcatagaccttttattagggcaatttgatgctatgtgacctcttcctaaggatttgaaacatttaattgatgaatgagaagaattagga |
27742442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 27741179 - 27741276
Alignment:
| Q |
154 |
tctttaaatttccattggttttgtcttaaagtttcttgagcttagtttttggcctcttgaatgatactttcttattattgctcttccacacttgaaaga |
252 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||| |||| |
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| T |
27741179 |
tcttcaaatttccattggttttgtcttagagtttcttgagctta-ttcttggcctcttgaatgatattttcttattgttgctcttccacacttgtaaga |
27741276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 19288856 - 19288814
Alignment:
| Q |
146 |
cttgcttgtctttaaatttccattggttttgtcttaaagtttc |
188 |
Q |
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| T |
19288856 |
cttgcttgtctttaaatttctattggttttgtcttagagtttc |
19288814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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