View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20153_high_2 (Length: 644)
Name: NF20153_high_2
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 4384517 - 4383889
Alignment:
| Q |
1 |
ccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcatttttactatcataatttccaactcctctaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384517 |
ccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcatttttactatcataatttccaactcctctaccaa |
4384418 |
T |
|
| Q |
101 |
caacaaagaaattgaaaccatgaagatgaacaggatgactctctggtgcaatgattccagtatcttgcataacaagctgaacagtatcattaaatgataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384417 |
caacaaagaaattgaaaccatgaagatgaacaggatgactctcaggtgcaatgattccagtatcttgcataacaagctgaacagtatcattaaatgataa |
4384318 |
T |
|
| Q |
201 |
cttatataactttgtaccacttgtagtgttcaagtttttaggtccagcaccagtgaaattataaatatgaggtggatttggtggaaaatctgtagtaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4384317 |
cttatataactttgtaccacttgtagtgttcaagtttttaggtccagcaccagtgaaattataaatatgaggtggatttggtggaaaatctgcagtaaaa |
4384218 |
T |
|
| Q |
301 |
acatttttaatgttgaaataatgtgcttgtagcaaagctgtagttggcataacaaatgtaacattattaatagcagctacaactctactaccatttgcag |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4384217 |
acattcttaatgttgaaataatgtgcttgtagtaaagctgtagttggcataacaaatgtaacattattaatagcagctacaactctactaccatttccag |
4384118 |
T |
|
| Q |
401 |
ctttacatgaaggacaaggattaacccctaatccaacagtnnnnnnnngtgaatgatcaatttttaaaggaacattaactgggtatttcttggaattaag |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4384117 |
ctttacatgaaggacaaggattaacccctaatccaacagtaaaaaaaagtgaatgatcaatttttaaaggaacattaactgggtatttcttggaattaag |
4384018 |
T |
|
| Q |
501 |
tcctttaagtgagtttaaaaagttattagcaatttgtgtagcatttgtaggtggaggtgtagttagaaatgtaggggtgtttgtaagagtagttcctgaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4384017 |
tcctttaagtgagtttaaaaagttattagcaatttgtgtagcatttgtaggtggaggtgtagttagaaatgtaggggtgtttgtaagagtagttcctgaa |
4383918 |
T |
|
| Q |
601 |
taatgtaatgtagctgtggctgttaaatt |
629 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
4383917 |
taatgtaatgtagctgtggctgttaaatt |
4383889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 24068980 - 24069027
Alignment:
| Q |
96 |
accaacaacaaagaaattgaaaccatgaagatgaacaggatgactctc |
143 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| | |||||||||||| |
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|
| T |
24068980 |
accaacaacaaagaaattaaatccatgaagatgcaaaggatgactctc |
24069027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 25093319 - 25093154
Alignment:
| Q |
4 |
ccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcatttttactatcataatttccaactcctctaccaacaa |
103 |
Q |
| |
|
|||||||| ||||| || || ||||| || |||||||||||||| |||||||| ||| ||| |||||| |||| | || || ||| |||||||| | |
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| T |
25093319 |
ccagctggaacacctactgtattcctctccacaggatcaacaagattaaacttttttacatcctttttagaatcaaagttgccttgtcccctaccaacta |
25093220 |
T |
|
| Q |
104 |
caaagaaattgaaaccatgaagatgaacaggatgactctctggtgcaatgattccagtatcttgca |
169 |
Q |
| |
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|||||||||| || ||||||||||||| ||||||| |||| |||| | |||||||||||||||| |
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|
| T |
25093219 |
caaagaaattaaatccatgaagatgaataggatgattctcaggtgttaacattccagtatcttgca |
25093154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 29554602 - 29554528
Alignment:
| Q |
95 |
taccaacaacaaagaaattgaaaccatgaagatgaacaggatgactctctggtgcaatgattccagtatcttgca |
169 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||| ||||||| |||| || || || |||||||||||||||| |
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|
| T |
29554602 |
taccaactacaaagaaattgaatccatgtagatgaataggatgattctcaggagctatcattccagtatcttgca |
29554528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 29554348 - 29554299
Alignment:
| Q |
346 |
ggcataacaaatgtaacattattaatagcagctacaactctactaccatt |
395 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || ||||||||||||||||| |
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| T |
29554348 |
ggcatgacaaatgttacattatttatagctgcaacaactctactaccatt |
29554299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22603799 - 22603756
Alignment:
| Q |
1 |
ccaccagctggtacaccaacagtgttcctttcaacaggatcaac |
44 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
22603799 |
ccaccagcaggaacaccaacagtgttcctttcaacaggatcaac |
22603756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21206031 - 21205979
Alignment:
| Q |
1 |
ccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa |
53 |
Q |
| |
|
||||||| ||| |||||||| || ||||||||||| ||||||||||||||||| |
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|
| T |
21206031 |
ccaccagatggaacaccaactgtattcctttcaacgggatcaacaaggttaaa |
21205979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21854261 - 21854209
Alignment:
| Q |
1 |
ccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa |
53 |
Q |
| |
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||||||| ||| |||||||| || ||||||||||||||||||||||| ||||| |
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|
| T |
21854261 |
ccaccagatggaacaccaactgtattcctttcaacaggatcaacaagattaaa |
21854209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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