View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20153_high_5 (Length: 334)

Name: NF20153_high_5
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20153_high_5
NF20153_high_5
[»] chr4 (6 HSPs)
chr4 (161-316)||(26416759-26416913)
chr4 (12-114)||(26416646-26416748)
chr4 (235-316)||(18475053-18475134)
chr4 (235-313)||(18480998-18481076)
chr4 (238-316)||(21697986-21698064)
chr4 (239-316)||(32752769-32752846)
[»] chr5 (4 HSPs)
chr5 (235-316)||(19154090-19154171)
chr5 (235-316)||(19159995-19160076)
chr5 (235-316)||(4253108-4253189)
chr5 (235-316)||(11576525-11576604)
[»] chr3 (5 HSPs)
chr3 (235-316)||(7450842-7450923)
chr3 (235-316)||(7458984-7459065)
chr3 (235-294)||(7649519-7649578)
chr3 (235-316)||(36839898-36839977)
chr3 (235-316)||(36835871-36835950)
[»] chr1 (2 HSPs)
chr1 (235-316)||(48638868-48638949)
chr1 (250-316)||(51983555-51983619)
[»] scaffold0248 (1 HSPs)
scaffold0248 (235-316)||(20013-20094)
[»] chr7 (1 HSPs)
chr7 (236-316)||(9937354-9937434)
[»] scaffold0067 (1 HSPs)
scaffold0067 (250-316)||(42250-42314)
[»] chr8 (1 HSPs)
chr8 (209-291)||(35158746-35158828)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 26416759 - 26416913
Alignment:
Q  161 gataatccactttgaaggcttcttttctaaatgagctactgtgagttaatttctttaaaaacgtaaacgatattctacttaaacaacgaaaacttaaatt 260  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||||||    
T  26416759 gataatccactttgaag-cttcttttctaaatgagttattgtgagttaatttctttaaaaacgaaaacgactttctacttaaacaacggaaacttaaatt 26416857  T
Q  261 aaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  26416858 aaaggatcaaggcatacctccaaccattgttcctgtttgaagatggtgaggctctt 26416913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 26416646 - 26416748
Alignment:
Q  12 cataggtattgaagaagatcactagatattatgaattgaccatatttatgacaagatcgttgtcttccacccaaatcccataagcaccatcacaaccatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  26416646 cataggtattgaagaagatcactagatattatgaattgaccatatttatgacaagatcgttgtcttccacccaaatcccataagcatcgtcacaaccatt 26416745  T
Q  112 tag 114  Q
    |||    
T  26416746 tag 26416748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 18475134 - 18475053
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  18475134 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgcttgaagaagttgaggctctt 18475053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 18481076 - 18480998
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggct 313  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||||    
T  18481076 ctacttaaacagcggaaacttaaattaaaggattaaggcatacctccaaccattgctcctgcttgaagaagttgaggct 18480998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 21698064 - 21697986
Alignment:
Q  238 cttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    |||||||| || |||||||||||||||||||||||||||||| || |||||||||||| || |||| ||||||||||||    
T  21698064 cttaaacagcggaaacttaaattaaaggatcaaggcataccttcagccattgctcctgcttgaagaagttgaggctctt 21697986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 32752846 - 32752769
Alignment:
Q  239 ttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||| || |||||||||||||||||| ||||||||||| ||  ||||||||||| || |||| ||||||||||||    
T  32752846 ttaaacagcggaaacttaaattaaaggattaaggcataccttcagtcattgctcctgcttgaagaagttgaggctctt 32752769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 19154090 - 19154171
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  19154090 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctctt 19154171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 19159995 - 19160076
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  19159995 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctctt 19160076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 4253108 - 4253189
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||| ||| | |||||| || |||| ||||||||||||    
T  4253108 ctacttaaacaacggaaatttaaattaaaggatcaaggcatacctccagccactactcctgcttgaagaagttgaggctctt 4253189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 11576604 - 11576525
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || |||||||||||||||||| ||| ||||||||   |||||||||||| || |||| ||||||||||||    
T  11576604 ctacttaaacagcggaaacttaaattaaaggattaagacatacctc--gccattgctcctgcttgaagaagttgaggctctt 11576525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 7450923 - 7450842
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  7450923 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctctt 7450842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 7459065 - 7458984
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  7459065 ctacttaaacagcggaaatttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctctt 7458984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 7649578 - 7649519
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcct 294  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  7649578 ctacttaaacaacggaaacttaaattaaacgatcaaggcatacctccaaccattgctcct 7649519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 36839977 - 36839898
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || ||||||||||||  ||||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  36839977 ctacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctctt 36839898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 36835950 - 36835871
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || ||||||||||||  ||||||||||||||||||| |||||||||||| || |||| |||||| |||||    
T  36835950 ctacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttgaagaagttgagtctctt 36835871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 48638949 - 48638868
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  48638949 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctctt 48638868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 51983555 - 51983619
Alignment:
Q  250 aaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||||  ||||||||||||||||||  |||||||| ||| || |||| ||||||||||||    
T  51983555 aaacttaaatta--ggatcaaggcatacctcctgccattgcttctgcttgaagaagttgaggctctt 51983619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 20094 - 20013
Alignment:
Q  235 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||| || |||||||||||||||||| ||||||||||| |  |||||||||||  || |||| ||||||||||||    
T  20094 ctacttaaacagcggaaacttaaattaaaggattaaggcataccttccgccattgctcctacttgaagaagttgaggctctt 20013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 9937434 - 9937354
Alignment:
Q  236 tacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    |||||||||| |  |||||||| |||||||||||| | |||||| ||||| |||||| ||||| ||||||||||| |||||    
T  9937434 tacttaaacagcagaaacttaagttaaaggatcaaagtatacctacaaccgttgctcttgtttgaagatgttgagactctt 9937354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 42314 - 42250
Alignment:
Q  250 aaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctctt 316  Q
    ||||||||||||  ||||||||||||| ||||| |||||||||||| || |||  ||||||||||||    
T  42314 aaacttaaatta--ggatcaaggcatatctccagccattgctcctgcttgaagtagttgaggctctt 42250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 35158746 - 35158828
Alignment:
Q  209 atttctttaaaaacgtaaacgatattctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgct 291  Q
    |||||||||||| | |||| || ||| | ||||||||| | |||||||||||||| ||  |||||||||||||  ||||||||    
T  35158746 atttctttaaaaccataaaagaaattatgcttaaacaagggaaacttaaattaaaagacaaaggcatacctcccgccattgct 35158828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University