View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20153_low_10 (Length: 308)
Name: NF20153_low_10
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 40519638 - 40519927
Alignment:
| Q |
15 |
attaacatattaattaacattgtgatgactttgtattgggatttttgtttt-gttatattatcctctgcattgttagttttaacaattaagaggctagaa |
113 |
Q |
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| T |
40519638 |
attaacatattaattaacattgtgatgactttgtattgggatttttttttttgttatattatcctctgcattgttagttttaacaattaagaggctagaa |
40519737 |
T |
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| Q |
114 |
aaaagttaaaatttttagagctcaaaactaatatcaataactgatatgaattttttggtgaaatgtctttaaccaaaatcaacatgtgtttgctttatat |
213 |
Q |
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| T |
40519738 |
aaaagttaaaatttttagagctcaaaactaatatcaataactgatatgaattttttggtgaaatgtctttaaccaaaatcaacatgtgtttgctttatat |
40519837 |
T |
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| Q |
214 |
taccaaaaataattttcacatggttttgagatgttttgtttctcacctggatgcaaattgagcaacatgattcattgtataatttcatcat |
304 |
Q |
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| T |
40519838 |
taccaaaaaaaatattcacatggttttgagatg-tttgtttctcacctggatgcaaattgagcaacatgattcattgtataatttcatcat |
40519927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 41781998 - 41781857
Alignment:
| Q |
27 |
attaacattgtgatgactttgtattgggatttttgttttgttatattatcctct-gcattgttagttttaacaattaagaggctagaaaaaagttaaaat |
125 |
Q |
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| T |
41781998 |
attaacattgcgatgactttgtattcgaatttttattttc--atattagcctcttgcattgttagttttaacaattaagaggctagaaaaaagtcaaaaa |
41781901 |
T |
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| Q |
126 |
ttttagagctcaaaactaatatcaataactgatatgaatttttt |
169 |
Q |
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| T |
41781900 |
atttagagttcaaaactaatatcaataaatgatatgaatttttt |
41781857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 40510881 - 40510933
Alignment:
| Q |
252 |
tttctcacctggatgcaaattgagcaacatgattcattgtataatttcatcat |
304 |
Q |
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| T |
40510881 |
tttctgacctgtaagcaaattgagcagcatgactcattgtataatttcatcat |
40510933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 18163682 - 18163795
Alignment:
| Q |
27 |
attaacattgtgatgactttgtattgggatttttgttttgtt-atattatcctctgcattgttagttttaacaattaagaggctagaaaaaagttaaaat |
125 |
Q |
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| T |
18163682 |
attaacattttgatgactttgttttaggactttt---ttgttcatattagcctctgcattgttagttttaacaactaagaggctagaaaaaagttaaaaa |
18163778 |
T |
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| Q |
126 |
ttttagagctcaaaact |
142 |
Q |
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||||| ||||||||||| |
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| T |
18163779 |
ttttatagctcaaaact |
18163795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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