View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20153_low_12 (Length: 285)
Name: NF20153_low_12
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 40940777 - 40941047
Alignment:
| Q |
18 |
aatggagaatgtcatggacaggactagacgtgaagcagagaattaaacgaaatttgctatacaggtcaaagtttgaacatttttgtcccaaataacttac |
117 |
Q |
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| T |
40940777 |
aatggagaatgtcatggacaggactagacgtgaagcagagaattcaaggaaattcgctatacaggtcaaaatttgaacatttttgtcccaaataacttac |
40940876 |
T |
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| Q |
118 |
tcataannnnnnngctgatttatttaaatgtgctgtagaattttgcaaagagtttacttgatgttgcggataatttgggaagagcttcatcagttgtaaa |
217 |
Q |
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| T |
40940877 |
tcataatttttttgctgatttatttaaatgtgctgtagaatttcgcaaagagtttacttgatgttgcggataatttgggaagagcttcatcagttgtaaa |
40940976 |
T |
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| Q |
218 |
agaaagtttttccaaaattgatacgtcaagtga---ctccgctgaagcagtgaaactcctgaagacacttc |
285 |
Q |
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| T |
40940977 |
agaaagtttttccaaaattgatacgtcaagtgactcctccgctgaagcggtgaaactcctgaagacacttc |
40941047 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 21505120 - 21505207
Alignment:
| Q |
151 |
tgtagaattttgcaaagagtttacttgatgttgcggataatttgggaagagcttcatcagttgtaaaagaaagtttttccaaaattga |
238 |
Q |
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| T |
21505120 |
tgtagagttttgccaagagtttacttgatgttgctgacaatttgggaagagcttcttcagttgtaaaggacagtttttcaaaaattga |
21505207 |
T |
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