View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20153_low_13 (Length: 273)

Name: NF20153_low_13
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20153_low_13
NF20153_low_13
[»] chr1 (3 HSPs)
chr1 (18-261)||(5960157-5960399)
chr1 (45-247)||(10549497-10549695)
chr1 (120-261)||(16766069-16766209)
[»] chr5 (6 HSPs)
chr5 (47-257)||(31043986-31044194)
chr5 (52-204)||(20234852-20235002)
chr5 (47-187)||(31059330-31059468)
chr5 (57-197)||(25762004-25762142)
chr5 (120-261)||(31048712-31048853)
chr5 (125-199)||(34832211-34832285)
[»] chr2 (4 HSPs)
chr2 (47-158)||(10925990-10926099)
chr2 (120-204)||(17310783-17310867)
chr2 (120-204)||(29810178-29810262)
chr2 (122-204)||(30213750-30213832)
[»] chr3 (2 HSPs)
chr3 (46-108)||(25478885-25478947)
chr3 (125-198)||(48094969-48095042)
[»] chr7 (2 HSPs)
chr7 (120-204)||(19217401-19217485)
chr7 (122-204)||(41255749-41255831)
[»] chr8 (2 HSPs)
chr8 (120-199)||(23255018-23255097)
chr8 (57-105)||(756290-756338)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 5960399 - 5960157
Alignment:
Q  18 agcaaatcctattctagtaacagagagatatcaccctcatactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgggnnnnnnnn 117  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||            
T  5960399 agcaaatcctattctggtaacagagagatatcaccctcatattcgaacctcaacctcttttagtgagtgtggattttatccaaacggatggggtttttt- 5960301  T
Q  118 gctcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960300 gctcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgct 5960201  T
Q  218 cgattagcctcatctgcgagataatgcaaagcgtttcttgatat 261  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  5960200 cgatcagcctcatctgcgagataatgcaaagcgtttcttgatat 5960157  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 247
Target Start/End: Complemental strand, 10549695 - 10549497
Alignment:
Q  45 atatcaccctcatactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgggnnnnnnnngctcttgatcttcaatgcaatcgcaca 144  Q
    ||||||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||||        | |||||||||||||||||||||||||    
T  10549695 atatcaccctcatactcgaacctcaacatcttccagtgagtgtggatttcatccaaacggatggggatttt--gttcttgatcttcaatgcaatcgcaca 10549598  T
Q  145 cgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgctcgattagcctcatctgcgagataatgc 244  Q
    | |||||||||||| | |||||||| || |||||||||  ||||| ||||||||| |||| |  |||||||||| || ||| || ||| |||||||||||    
T  10549597 cacacatggcaatccgtaagtgatcgaactcaaacaac--cacctggatttatccgtaccaagtccaactgctcaatcagcatcgtctacgagataatgc 10549500  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 16766069 - 16766209
Alignment:
Q  120 tcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgctcg 219  Q
    |||||||||||||||||||| | |||||||| | ||||| ||||||||||  | ||||||||||| |  | ||||||||| | |||| | | | ||||||    
T  16766069 tcttgatcttcaatgcaatcac-cacgcacacgacaatccgaaagtgatctgactcaaacaaccaaatttggatttatccgttccgatatcgagtgctcg 16766167  T
Q  220 attagcctcatctgcgagataatgcaaagcgtttcttgatat 261  Q
    ||  ||||| ||||||| |||||||||| | |||||||||||    
T  16766168 atcggcctcgtctgcgatataatgcaaaacttttcttgatat 16766209  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 257
Target Start/End: Original strand, 31043986 - 31044194
Alignment:
Q  47 atcaccctcatactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgggnnnnnnnngctcttgatcttcaatgcaatcgcacacg 146  Q
    ||||||||| |||||||||||||||||| |  ||||||||||||| | ||||||||  |||||        | |||||||||||| |||||||| |||||    
T  31043986 atcaccctcttactcgaacttcaacctcatctagtgagtgtggatgtcatccaaacaaatgggggtgtt--gttcttgatcttcattgcaatcgtacacg 31044083  T
Q  147 cacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgctcgattagcctcatctgcgagataatgcaa 246  Q
    ||||||| |||||| ||| ||| ||| | |||||||||||| | ||||||||| |||    ||||||| |||||| | ||||   |||||||||||||||    
T  31044084 cacatggaaatctgtaagcgatgaaaattaaacaaccacacttggatttatccgtactacaaccaactactcgatcaacctcgattgcgagataatgcaa 31044183  T
Q  247 agcgtttcttg 257  Q
    |||||| ||||    
T  31044184 agcgttccttg 31044194  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 20234852 - 20235002
Alignment:
Q  52 cctcatactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgggnnnnnnnngctcttgatcttcaatgcaatcgcacacgcacat 151  Q
    |||| ||||||||| |||||||||||||||| ||||| ||||  |||||| ||||||         | |||||||||||||  |||||  |||||||||     
T  20234852 cctcgtactcgaacctcaacctctttcagtgggtgtgaatttcttccaaaaggatgg--tggttccgttcttgatcttcaaaccaatcatacacgcacac 20234949  T
Q  152 ggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccatacc 204  Q
    || || | | ||||||||||| |||||||||||||  ||||||||||| ||||    
T  20234950 ggtaacccgtaagtgatcaaactcaaacaaccacattttgatttatccgtacc 20235002  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 31059330 - 31059468
Alignment:
Q  47 atcaccctcatactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgggnnnnnnnngctcttgatcttcaatgcaatcgcacacg 146  Q
    ||||||||| ||||||||| |||||||| |  ||||||||||||| | ||||||||  |||||        | |||||||||||| |||||| | |||||    
T  31059330 atcaccctcttactcgaacctcaacctcatctagtgagtgtggatgtcatccaaacaaatgggggtgtt--gttcttgatcttcattgcaattgtacacg 31059427  T
Q  147 cacatggcaatctgaaagtgatcaaattcaaacaaccacac 187  Q
    ||||||| |||||| ||| ||| ||| | ||||||||||||    
T  31059428 cacatggaaatctgtaagcgatgaaaattaaacaaccacac 31059468  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 25762142 - 25762004
Alignment:
Q  57 tactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgggnnnnnnnngctcttgatcttcaatgcaatcgcacacgcacatggcaa 156  Q
    ||||||||| |||||||||| ||||| ||||| |||| |||||||||||  ||        | | |||||||||||  |||||  ||||||||| || ||    
T  25762142 tactcgaacctcaacctcttccagtgggtgtgaatttcatccaaacgga--gggcggttccgtttttgatcttcaaaccaatcatacacgcacacggtaa 25762045  T
Q  157 tctgaaagtgatcaaattcaaacaaccacaccttgatttat 197  Q
    || | ||||||||||| |||||||||||||  |||||||||    
T  25762044 tccgtaagtgatcaaactcaaacaaccacattttgatttat 25762004  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 31048712 - 31048853
Alignment:
Q  120 tcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccataccgacaccaactgctcg 219  Q
    |||||||||||| |||||||  | |||||||||| ||| || ||| ||| ||| | ||||||| |||| | ||||||||| |||    ||||||| ||||    
T  31048712 tcttgatcttcattgcaatcataaacgcacatggaaatttgtaagcgatgaaaattaaacaacgacacttggatttatccgtactacaaccaactactcg 31048811  T
Q  220 attagcctcatctgcgagataatgcaaagcgtttcttgatat 261  Q
    || | ||||   ||| ||||||||||||||||| ||||||||    
T  31048812 atcaacctcgattgcaagataatgcaaagcgttccttgatat 31048853  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 34832211 - 34832285
Alignment:
Q  125 atcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatcc 199  Q
    ||||||||  |||||  ||||||||| || |||| | ||||||||||| |||||||||||||  |||||||||||    
T  34832211 atcttcaaaccaatcatacacgcacacggtaatccgtaagtgatcaaactcaaacaaccacattttgatttatcc 34832285  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 10926099 - 10925990
Alignment:
Q  47 atcaccctcatactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgggnnnnnnnngctcttgatcttcaatgcaatcgcacacg 146  Q
    ||||||||||||||||||| |||||||||| || | ||||||||||| ||||||||| ||| |        | |||||||||| |||||||||| ||||     
T  10926099 atcaccctcatactcgaacctcaacctcttccaataagtgtggatttcatccaaacgaatgag--ggtgttgttcttgatctttaatgcaatcgtacaca 10926002  T
Q  147 cacatggcaatc 158  Q
    ||||||||||||    
T  10926001 cacatggcaatc 10925990  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 17310783 - 17310867
Alignment:
Q  120 tcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccatacc 204  Q
    |||||||||||||  || ||  ||||||||| || |||| | ||||||||||| |||||||||||||  ||||||||||| ||||    
T  17310783 tcttgatcttcaaatcattcatacacgcacacggtaatccgtaagtgatcaaactcaaacaaccacattttgatttatccgtacc 17310867  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 29810262 - 29810178
Alignment:
Q  120 tcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccatacc 204  Q
    |||||||||||||  |||||  ||||||||| || |||| | || |||||||| |||||||||||||  ||||||||||| ||||    
T  29810262 tcttgatcttcaaatcaatcatacacgcacacggtaatccgtaaatgatcaaactcaaacaaccacattttgatttatccgtacc 29810178  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 30213832 - 30213750
Alignment:
Q  122 ttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccatacc 204  Q
    |||||||||||  |||||  ||||||||| || |||| | ||||||||||| | |||||||||||  ||||||||||| ||||    
T  30213832 ttgatcttcaaaccaatcatacacgcacacggtaatccgtaagtgatcaaacttaaacaaccacattttgatttatccgtacc 30213750  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 25478885 - 25478947
Alignment:
Q  46 tatcaccctcatactcgaacttcaacctctttcagtgagtgtggattttatccaaacggatgg 108  Q
    |||||||||||||||||||| ||||||| ||   |||||||||||||| ||||||| ||||||    
T  25478885 tatcaccctcatactcgaacctcaacctgttctggtgagtgtggatttaatccaaatggatgg 25478947  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 48095042 - 48094969
Alignment:
Q  125 atcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatc 198  Q
    ||||||||  |||||  ||||||||| || |||| | ||||||||||| |||||||||||||  ||||||||||    
T  48095042 atcttcaaaccaatcatacacgcacacggtaatccgtaagtgatcaaactcaaacaaccacattttgatttatc 48094969  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 19217485 - 19217401
Alignment:
Q  120 tcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccatacc 204  Q
    |||||||||||||  |||||  ||| ||||| || |||| | ||||||||||| |||||||||||||  ||||||||||| ||||    
T  19217485 tcttgatcttcaaaccaatcatacaagcacacggtaatccgtaagtgatcaaactcaaacaaccacattttgatttatccgtacc 19217401  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 41255749 - 41255831
Alignment:
Q  122 ttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatccatacc 204  Q
    |||||||||||  |||||  ||||||||| || |||| | ||||||||||| ||||||||||| |  ||||||||||| ||||    
T  41255749 ttgatcttcaaaccaatcatacacgcacacggtaatccgtaagtgatcaaactcaaacaaccatattttgatttatccgtacc 41255831  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 23255097 - 23255018
Alignment:
Q  120 tcttgatcttcaatgcaatcgcacacgcacatggcaatctgaaagtgatcaaattcaaacaaccacaccttgatttatcc 199  Q
    |||||||||||||  |||||  ||||||||| || |||| | ||||||||||| |||||||||||||  || ||||||||    
T  23255097 tcttgatcttcaaaccaatcatacacgcacacggtaatccgtaagtgatcaaactcaaacaaccacatttttatttatcc 23255018  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 756338 - 756290
Alignment:
Q  57 tactcgaacttcaacctctttcagtgagtgtggattttatccaaacgga 105  Q
    ||||||||| |||||||||| ||||||||||| |||| ||| |||||||    
T  756338 tactcgaacctcaacctcttccagtgagtgtgaatttcatcgaaacgga 756290  T

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