View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20153_low_14 (Length: 247)

Name: NF20153_low_14
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20153_low_14
NF20153_low_14
[»] chr5 (24 HSPs)
chr5 (13-161)||(33044962-33045110)
chr5 (162-230)||(39054700-39054768)
chr5 (162-231)||(7552857-7552926)
chr5 (162-229)||(5168297-5168364)
chr5 (162-229)||(7287079-7287146)
chr5 (154-229)||(13168636-13168711)
chr5 (162-229)||(39591794-39591861)
chr5 (162-229)||(39592186-39592253)
chr5 (163-229)||(13309997-13310063)
chr5 (162-229)||(1671656-1671723)
chr5 (162-229)||(17626100-17626167)
chr5 (162-229)||(28306022-28306089)
chr5 (163-229)||(2972438-2972504)
chr5 (165-229)||(8687005-8687069)
chr5 (189-229)||(14051232-14051272)
chr5 (162-229)||(1764338-1764405)
chr5 (162-229)||(18258683-18258750)
chr5 (162-229)||(26791134-26791201)
chr5 (168-227)||(27488003-27488062)
chr5 (162-229)||(33037634-33037701)
chr5 (168-229)||(7076464-7076525)
chr5 (162-227)||(22972233-22972298)
chr5 (157-226)||(42478075-42478144)
chr5 (162-222)||(35634725-35634785)
[»] chr1 (31 HSPs)
chr1 (162-231)||(26207953-26208022)
chr1 (162-231)||(18434907-18434976)
chr1 (162-226)||(19947634-19947698)
chr1 (162-225)||(30570642-30570705)
chr1 (162-229)||(31827065-31827132)
chr1 (166-221)||(40328663-40328718)
chr1 (162-229)||(44519041-44519108)
chr1 (162-227)||(25672458-25672523)
chr1 (168-229)||(51137547-51137608)
chr1 (162-230)||(50149059-50149127)
chr1 (162-229)||(21401512-21401579)
chr1 (162-229)||(46907309-46907376)
chr1 (162-229)||(48470753-48470820)
chr1 (163-229)||(43775320-43775386)
chr1 (163-229)||(45333825-45333891)
chr1 (162-227)||(9566850-9566915)
chr1 (166-226)||(26020970-26021030)
chr1 (162-226)||(30467423-30467487)
chr1 (162-229)||(52576191-52576259)
chr1 (162-229)||(3981916-3981983)
chr1 (162-229)||(26469473-26469540)
chr1 (162-229)||(27464947-27465014)
chr1 (162-229)||(31088295-31088362)
chr1 (162-229)||(33100922-33100989)
chr1 (162-229)||(45121371-45121438)
chr1 (162-229)||(49065254-49065321)
chr1 (162-229)||(50726138-50726205)
chr1 (162-227)||(48103252-48103318)
chr1 (165-226)||(8447854-8447914)
chr1 (162-229)||(2571749-2571817)
chr1 (166-230)||(6809693-6809757)
[»] chr3 (34 HSPs)
chr3 (162-231)||(28539630-28539699)
chr3 (162-231)||(35376971-35377040)
chr3 (161-228)||(44463472-44463539)
chr3 (162-229)||(42889099-42889166)
chr3 (162-229)||(5114192-5114259)
chr3 (162-229)||(37503637-37503704)
chr3 (162-229)||(41309231-41309298)
chr3 (162-229)||(44383303-44383370)
chr3 (162-229)||(46624021-46624088)
chr3 (164-229)||(11630642-11630707)
chr3 (166-229)||(13348028-13348091)
chr3 (162-229)||(21217626-21217693)
chr3 (163-226)||(23155329-23155392)
chr3 (162-229)||(23592572-23592639)
chr3 (162-229)||(23600707-23600774)
chr3 (162-229)||(37056947-37057014)
chr3 (162-229)||(44413285-44413352)
chr3 (162-229)||(52326133-52326200)
chr3 (162-229)||(55151607-55151674)
chr3 (164-229)||(5244343-5244408)
chr3 (162-227)||(35201324-35201389)
chr3 (166-227)||(39630511-39630572)
chr3 (193-229)||(8847224-8847260)
chr3 (162-229)||(19149104-19149171)
chr3 (162-229)||(24256661-24256728)
chr3 (162-229)||(27541392-27541459)
chr3 (162-229)||(32924171-32924238)
chr3 (162-221)||(36670904-36670963)
chr3 (166-229)||(47472443-47472506)
chr3 (163-229)||(42358529-42358595)
chr3 (162-227)||(31157567-31157632)
chr3 (162-227)||(38926744-38926809)
chr3 (162-227)||(44813252-44813317)
chr3 (162-222)||(35597283-35597343)
[»] chr2 (25 HSPs)
chr2 (162-231)||(8848587-8848656)
chr2 (162-231)||(27490620-27490689)
chr2 (166-227)||(29349622-29349683)
chr2 (162-229)||(19633396-19633464)
chr2 (162-229)||(19830297-19830365)
chr2 (162-229)||(3838770-3838837)
chr2 (156-229)||(9207704-9207777)
chr2 (162-231)||(13333060-13333129)
chr2 (162-229)||(1248800-1248867)
chr2 (162-229)||(3097751-3097818)
chr2 (162-229)||(9647246-9647313)
chr2 (162-229)||(9990805-9990872)
chr2 (162-229)||(22888707-22888774)
chr2 (162-229)||(41056637-41056704)
chr2 (163-229)||(6049236-6049302)
chr2 (162-227)||(7698287-7698352)
chr2 (166-231)||(18846723-18846788)
chr2 (162-229)||(2076683-2076750)
chr2 (162-229)||(18254099-18254166)
chr2 (162-229)||(25270472-25270539)
chr2 (162-229)||(32477446-32477513)
chr2 (162-229)||(41195698-41195765)
chr2 (162-229)||(42421788-42421855)
chr2 (162-215)||(42434247-42434300)
chr2 (162-226)||(1907653-1907717)
[»] chr7 (13 HSPs)
chr7 (162-229)||(24614206-24614273)
chr7 (162-229)||(9428530-9428597)
chr7 (162-227)||(38944913-38944978)
chr7 (162-229)||(31445432-31445499)
chr7 (162-225)||(40417892-40417955)
chr7 (162-229)||(46022157-46022224)
chr7 (162-229)||(41189431-41189500)
chr7 (162-226)||(41989630-41989694)
chr7 (162-229)||(7701658-7701725)
chr7 (162-229)||(38956508-38956575)
chr7 (162-229)||(43942746-43942813)
chr7 (162-227)||(38347660-38347726)
chr7 (162-226)||(41018781-41018845)
[»] chr6 (18 HSPs)
chr6 (162-229)||(4820481-4820548)
chr6 (162-229)||(11612302-11612369)
chr6 (162-231)||(22079453-22079522)
chr6 (162-230)||(277104-277172)
chr6 (163-227)||(3552046-3552110)
chr6 (162-229)||(14818046-14818113)
chr6 (162-229)||(16199564-16199631)
chr6 (162-229)||(26595463-26595530)
chr6 (162-229)||(32316818-32316885)
chr6 (163-229)||(2241917-2241982)
chr6 (172-229)||(11014890-11014947)
chr6 (165-229)||(18737460-18737524)
chr6 (162-229)||(552907-552974)
chr6 (162-229)||(1156834-1156901)
chr6 (162-229)||(33430252-33430319)
chr6 (162-229)||(33603170-33603237)
chr6 (163-229)||(30423443-30423509)
chr6 (162-203)||(91801-91842)
[»] chr4 (37 HSPs)
chr4 (162-229)||(39195171-39195238)
chr4 (162-229)||(38376380-38376447)
chr4 (162-229)||(2575680-2575747)
chr4 (162-229)||(34616675-34616742)
chr4 (162-229)||(43175098-43175165)
chr4 (163-229)||(19473847-19473913)
chr4 (153-226)||(3316471-3316546)
chr4 (162-229)||(26492121-26492188)
chr4 (162-229)||(26732339-26732406)
chr4 (162-229)||(29175339-29175406)
chr4 (162-229)||(36178020-36178087)
chr4 (162-229)||(38382435-38382502)
chr4 (162-229)||(39440598-39440665)
chr4 (162-229)||(44539848-44539915)
chr4 (163-229)||(46038777-46038841)
chr4 (162-229)||(47181955-47182022)
chr4 (162-229)||(48402087-48402154)
chr4 (162-229)||(56363935-56364002)
chr4 (162-228)||(515535-515601)
chr4 (163-229)||(42395928-42395994)
chr4 (162-231)||(21777478-21777547)
chr4 (164-229)||(27050978-27051043)
chr4 (162-227)||(31641455-31641520)
chr4 (162-229)||(39654938-39655005)
chr4 (162-229)||(51986156-51986223)
chr4 (162-229)||(53801649-53801716)
chr4 (163-229)||(10250406-10250472)
chr4 (163-229)||(11068802-11068868)
chr4 (164-226)||(19748752-19748814)
chr4 (164-226)||(19790992-19791054)
chr4 (163-229)||(24575742-24575808)
chr4 (162-227)||(38510663-38510726)
chr4 (162-223)||(5233560-5233621)
chr4 (164-229)||(37997368-37997433)
chr4 (168-229)||(38134467-38134528)
chr4 (188-229)||(39478551-39478592)
chr4 (162-226)||(47744402-47744467)
[»] chr8 (15 HSPs)
chr8 (162-230)||(37133752-37133820)
chr8 (163-229)||(36816507-36816573)
chr8 (162-229)||(37449315-37449382)
chr8 (162-227)||(32133439-32133504)
chr8 (162-221)||(4054176-4054235)
chr8 (162-229)||(22719554-22719621)
chr8 (162-229)||(24479337-24479404)
chr8 (162-229)||(27325872-27325939)
chr8 (162-229)||(29025374-29025441)
chr8 (166-229)||(34639647-34639710)
chr8 (162-229)||(36660340-36660407)
chr8 (165-227)||(27854661-27854723)
chr8 (162-229)||(11253432-11253499)
chr8 (162-229)||(23754596-23754663)
chr8 (166-229)||(36251440-36251503)
[»] scaffold0148 (1 HSPs)
scaffold0148 (162-227)||(20791-20856)
[»] scaffold0087 (1 HSPs)
scaffold0087 (162-229)||(53251-53318)
[»] scaffold0519 (1 HSPs)
scaffold0519 (162-229)||(11896-11963)
[»] scaffold0098 (1 HSPs)
scaffold0098 (166-229)||(49409-49472)
[»] scaffold0019 (1 HSPs)
scaffold0019 (162-226)||(71478-71542)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 33044962 - 33045110
Alignment:
Q  13 caaagggaaaccttgagcatatgaatgattgtgtcttgtgtttgggttctcaaaatcacgggctata----taactattgtacatttgtaccaccatttg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||     
T  33044962 caaagggaaaccttgagcatatgaatgattgtgtcttgtgtttgggttctcaaaatcacgggctatataattaactattgtacatttgtaccaccatttc 33045061  T
Q  109 aatcagtgtgaataataaataaatcatcattcactctattcttctctatatat 161  Q
    |||||||||||||    |||||||| ||||||||||||||||||||| |||||    
T  33045062 aatcagtgtgaat----aataaatcgtcattcactctattcttctctctatat 33045110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 39054768 - 39054700
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgat 230  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  39054768 gttgtgttatttgaacatccatttagatgacaacttttgtgataatcaaaattttgcaaagaaaatgat 39054700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 7552857 - 7552926
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||||||  |||||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  7552857 gttgtgttatttgaacatccatttagatgacaacttttgtgacaaccaaaattttgcaaagaaaatgatg 7552926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 5168364 - 5168297
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || || |||| ||||||||||| ||  |||||||||||||||||||||    
T  5168364 gttgtgttatttgaacattcatatatatgacaacttttgtgacaactaaaattttacaaagaaaatga 5168297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 7287079 - 7287146
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| || ||||||||||||||||||||||    
T  7287079 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatga 7287146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 13168711 - 13168636
Alignment:
Q  154 ctatatatgttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||| |||||||||||| |||||| || ||  ||| ||||||||||| |||||||||||||||||| ||||||    
T  13168711 ctatataagttgtgttatttcaacattcatatatgtgacaacttttgtgacaatcaaaattttacaaaggaaatga 13168636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 39591861 - 39591794
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| |||||| |||| ||| ||||||| || |||| |||||||||||||||||    
T  39591861 gttgtgttatttgaacatctatttatatgacaacctttgtgacaaccaaagttttacaaagaaaatga 39591794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 39592253 - 39592186
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| |||||| |||| ||| ||||||| || |||| |||||||||||||||||    
T  39592253 gttgtgttatttgaacatctatttatatgacaacctttgtgacaaccaaagttttacaaagaaaatga 39592186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 13310063 - 13309997
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||  |||||||||| || ||||| || ||||||| |||||||||||||||||    
T  13310063 ttgtgttatttgaacatccatttagatgacaatttttgagacaatcaaatttttacaaagaaaatga 13309997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1671723 - 1671656
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| |||||||||||||||||| ||||||    
T  1671723 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaatcaaaattttacaaaggaaatga 1671656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 17626167 - 17626100
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  17626167 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 17626100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 28306022 - 28306089
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||||||||||    
T  28306022 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatga 28306089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 2972504 - 2972438
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||||| ||  ||| ||||||||||| ||||||||||| || ||| ||||||    
T  2972504 ttgtgttatttgaacatttatatatgtgacaacttttgtgacaatcaaaatttcacgaaggaaatga 2972438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 8687069 - 8687005
Alignment:
Q  165 gtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||| || ||  ||| ||||||| | | |||||||||||||||||||||||||    
T  8687069 gtgttatttgaacattcatatatgtgacaacttttataacaatcaaaattttacaaagaaaatga 8687005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 14051232 - 14051272
Alignment:
Q  189 tgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  14051232 tgataacttttgtgacaaccaaaattttacaaagaaaatga 14051272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1764405 - 1764338
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| || |||||||||| |||| ||||||    
T  1764405 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttagaaaggaaatga 1764338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 18258683 - 18258750
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  18258683 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 18258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 26791134 - 26791201
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  26791134 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 26791201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 27488062 - 27488003
Alignment:
Q  168 ttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||||||||| |||||  ||||||| ||||| |||||  |||||||||||||||||||    
T  27488062 ttatttgaacatctatttttatgataatttttgagataactaaaattttacaaagaaaat 27488003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 33037701 - 33037634
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  33037701 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 33037634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 7076464 - 7076525
Alignment:
Q  168 ttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||| || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  7076464 ttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 7076525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 22972298 - 22972233
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||  ||||| || | |||||||| || ||  |||||||||||||||||||    
T  22972298 gttgtgttatttgaacatccatttatataacaacttttgagacaactaaaattttacaaagaaaat 22972233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 42478075 - 42478144
Alignment:
Q  157 tatatgttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    |||| ||| |||||||| |||||||||||   |||||||||||| || ||||| ||||||||||| ||||    
T  42478075 tataagttatgttatttaaacatttatttgattgataacttttgcgacaatcataattttacaaaaaaaa 42478144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 35634725 - 35634785
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaag 222  Q
    ||||||||||||||||||  || ||  ||| ||||||| |||||| |||||||||||||||    
T  35634725 gttgtgttatttgaacatccatatatgtgacaacttttatgataaccaaaattttacaaag 35634785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 26208022 - 26207953
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  26208022 gttgtgttatttgaacatctatttagattataacttttgtgataatcaaaattttgcaaagaaaatgatg 26207953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 18434976 - 18434907
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  18434976 gttgtgttatttgaaaatctatttagatgacaacttttgtgacaaccaaaattttgcaaagaaaatgatg 18434907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 19947634 - 19947698
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||||||||||||| |||| |||||||| || || |||||||||| ||||||||    
T  19947634 gttgtgttatttgaacatttatttatatgacaacttttgagacaaccaaaattttataaagaaaa 19947698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 30570705 - 30570642
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaa 225  Q
    ||||||||||||||||||| ||||| ||||||| |||||  | |||||||||||||||||||||    
T  30570705 gttgtgttatttgaacattcatttatatgataatttttgaaacaatcaaaattttacaaagaaa 30570642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 31827132 - 31827065
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| ||||||||||| ||||||||  | || |||||||||||||| |||||||    
T  31827132 gttgtgttatttgaacatctatttagatgacaacttttgatacaaccaaaattttacaaaaaaaatga 31827065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 40328663 - 40328718
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaa 221  Q
    |||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||    
T  40328663 tgttatttgaacatctatttagatgataacttttgatataaccaaaattttacaaa 40328718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 44519041 - 44519108
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| |||||||||||||| ||||||||||||||| ||||||    
T  44519041 gttgtgttatttgaacattcatatatgtgacaacttttgtgataaccaaaattttacaaaggaaatga 44519108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 25672523 - 25672458
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||| |||| ||||||  |||||| |||||||||||||  |||||||||||||||||||||||||    
T  25672523 gttgtattatctgaacaactatttatatgataacttttgatataatcaaaattttacaaagaaaat 25672458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 51137547 - 51137608
Alignment:
Q  168 ttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||| ||||||||| |||||||  |||||||||| |||||||||||||||| |||||    
T  51137547 ttatttgaatatttatttatatgataatatttgtgataaacaaaattttacaaagagaatga 51137608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 50149127 - 50149059
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgat 230  Q
    ||||||||||||||||||   |||| |||| ||||||||  | ||||||||||||||||||||||||||    
T  50149127 gttgtgttatttgaacatcattttatatgacaacttttgcaacaatcaaaattttacaaagaaaatgat 50149059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 21401579 - 21401512
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  |||||  ||| ||||||||  | |||||||||||||||||||||||||    
T  21401579 gttgtgttatttgaacatccatttatgtgacaacttttgaaacaatcaaaattttacaaagaaaatga 21401512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 46907376 - 46907309
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| | || |||||||| || ||||||||||||| |||||||||||    
T  46907376 gttgtgttatttgaacatccatttatacgacaacttttgagacaatcaaaattttataaagaaaatga 46907309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 48470820 - 48470753
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| |||||||||||||||||| ||||||    
T  48470820 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaatcaaaattttacaaaggaaatga 48470753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 43775386 - 43775320
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||| ||| || ||  ||| ||||||| ||| |||||||||||||||||||||||||    
T  43775386 ttgtgttatttgaatattcatatatgtgacaacttttatgacaatcaaaattttacaaagaaaatga 43775320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 45333891 - 45333825
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| ||| ||  |||||| |||||||| ||| |||||||||||||| ||||||    
T  45333891 ttgtgttatttgaacatctatatatgtgataatttttgtgacaattaaaattttacaaaggaaatga 45333825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 9566850 - 9566915
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||| | ||| |||| |||||||| || || |||||||||||| |||||||    
T  9566850 gttgtgttatttgaacattcaattatatgacaacttttgagacaaccaaaattttacatagaaaat 9566915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 26020970 - 26021030
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||| ||||| |||| | |||||| || ||||||||||||||||| ||||    
T  26020970 tgttatttgaacattcatttatatgacatcttttgagacaatcaaaattttacaaaaaaaa 26021030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 30467423 - 30467487
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    |||||||||||||||||| || ||| |||| ||||||||||| ||  ||| ||||||||||||||    
T  30467423 gttgtgttatttgaacatctaattatatgacaacttttgtgacaactaaagttttacaaagaaaa 30467487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 52576191 - 52576259
Alignment:
Q  162 gttgtgttatttgaacattt-atttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| || || ||| ||| ||||||||||| || ||||||||||||||| ||||||    
T  52576191 gttgtgttatttgaacaattcatataggtgacaacttttgtgacaaccaaaattttacaaaggaaatga 52576259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 3981916 - 3981983
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||  |  ||| ||| ||||||| |||||||||||||||||||||||||    
T  3981916 gttgtgttatttgaacatccataaatgtgacaacatttgtgacaatcaaaattttacaaagaaaatga 3981983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 26469540 - 26469473
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  26469540 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 26469473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 27464947 - 27465014
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  27464947 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 27465014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 31088362 - 31088295
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || |||||||||||||| |||||||    
T  31088362 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaaaaaatga 31088295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 33100989 - 33100922
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| || |||||||||| |||| ||||||    
T  33100989 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttataaaggaaatga 33100922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 45121371 - 45121438
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  45121371 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 45121438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 49065254 - 49065321
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||| || |||||| |||| || |||   ||||| ||||||||||||||||||||||    
T  49065254 gttgtgttatttgaatatctatttatatgacaattttaaagataaccaaaattttacaaagaaaatga 49065321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 50726138 - 50726205
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  |||||| |||||||| || ||||||||| ||||||||||||    
T  50726138 gttgtgttatttgaacatccatatatgtgataatttttgtgacaaccaaaattttgcaaagaaaatga 50726205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 48103252 - 48103318
Alignment:
Q  162 gttgtgttatttgaa-catttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||| |||||||| ||| |||||| |||| |||||||| || || ||||||||||||||||||||    
T  48103252 gttgtgatatttgaaacatctatttatatgacaacttttgagacaaccaaaattttacaaagaaaat 48103318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 8447914 - 8447854
Alignment:
Q  165 gtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    |||||||||||||| | |||||| ||||||||| ||||| ||||| || |||||||||||||    
T  8447914 gtgttatttgaacaatcatttagttgataacttatgtgacaatcataa-tttacaaagaaaa 8447854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 2571817 - 2571749
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaatttt-acaaagaaaatga 229  Q
    ||||||||||||||||||  ||  | |||| ||||||||||| || ||||||||| |||||||||||||    
T  2571817 gttgtgttatttgaacatccatgcatatgacaacttttgtgacaaccaaaattttaacaaagaaaatga 2571749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 6809757 - 6809693
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgat 230  Q
    ||||||||||||||  ||||| |||| |||||||| || || |||||||||| | ||||||||||    
T  6809757 tgttatttgaacatccatttatatgacaacttttgggacaaccaaaattttatatagaaaatgat 6809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 28539630 - 28539699
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  28539630 gttgtgttatttgaacatccatttagatgataacttttgtgataaccaaaattttgcaaagaaaatgatg 28539699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 35376971 - 35377040
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||||||  |||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  35376971 gttgtgttatttgaacatccatttagatgacaacttttgtgacaaccaaaattttacaaagaaaatgatg 35377040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 44463539 - 44463472
Alignment:
Q  161 tgttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatg 228  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||||||||||||||||    
T  44463539 tgttgtgttatttgaacatcaaattatatgataacttttgagataatcaaaattttacaaagaaaatg 44463472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 42889166 - 42889099
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||| ||||| ||||||||||| ||||||||  |||| ||||||||||||||||||||||    
T  42889166 gttgtgttatttaaacatctatttagatgacaacttttgatataaccaaaattttacaaagaaaatga 42889099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 5114259 - 5114192
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| ||||||  ||| || |||| ||| |||||||||||||||||||||||||    
T  5114259 gttgtgttatttgaacatctatttatgtgacaatttttatgacaatcaaaattttacaaagaaaatga 5114192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 37503637 - 37503704
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||||||| ||  ||||||||||||||| || ||||||||| ||||| ||||||    
T  37503637 gttgtgttatttgaacatttatatatgtgataacttttgtgacaaccaaaattttgcaaaggaaatga 37503704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 41309298 - 41309231
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||   |||||||||||||| |||||||||||||||||||||||||    
T  41309298 gttgtgttatttgaacatccatatatgcgataacttttgtgacaatcaaaattttacaaagaaaatga 41309231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 44383370 - 44383303
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || ||||||||||||| |||||||||||    
T  44383370 gttgtgttatttgaacatccatttatatgacaacttttgagacaatcaaaattttataaagaaaatga 44383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 46624088 - 46624021
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||  |  ||||||||||||||| |||||||||||||||||||||||||    
T  46624088 gttgtgttatttgaacatccatacatgtgataacttttgtgacaatcaaaattttacaaagaaaatga 46624021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 11630642 - 11630707
Alignment:
Q  164 tgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| ||||| |||| || ||||| || ||| |||||||||||||||||||||    
T  11630642 tgtgttatttgaacattcatttatatgacaatttttgagacaattaaaattttacaaagaaaatga 11630707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 13348028 - 13348091
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||  ||||| |||| |||||||| || || ||||||||||||||||||||||    
T  13348028 tgttatttgaacatccatttatatgacaacttttgggacaaccaaaattttacaaagaaaatga 13348091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 21217693 - 21217626
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  21217693 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 21217626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 23155329 - 23155392
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||||  ||||||  |||||||||||  |||||||| ||||||||||||||||    
T  23155329 ttgtgttatttgaacaactatttaattgataacttttaagataatcataattttacaaagaaaa 23155392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 23592639 - 23592572
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  23592639 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 23592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 23600774 - 23600707
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  23600774 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 23600707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 37056947 - 37057014
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || ||| ||||||||||||||||||    
T  37056947 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaatattttacaaagaaaatga 37057014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 44413285 - 44413352
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| ||| ||  ||| ||||||||||| ||| |||||||||||||| ||||||    
T  44413285 gttgtgttatttgaacatctatatatgtgacaacttttgtgacaattaaaattttacaaaggaaatga 44413352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 52326200 - 52326133
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || || |||| ||||||| ||| |||||||||||||||||| ||||||    
T  52326200 gttgtgttatttgaacatccatatatatgacaacttttatgacaatcaaaattttacaaaggaaatga 52326133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 55151607 - 55151674
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||||||| ||  ||| ||||||||| | ||| |||||||||||||| ||||||    
T  55151607 gttgtgttatttgaacatttatatatgtgacaacttttgttacaattaaaattttacaaaggaaatga 55151674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 5244408 - 5244343
Alignment:
Q  164 tgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||||| ||  ||| || |||||||| || ||||||||||||||| ||||||    
T  5244408 tgtgttatttgaacatttatatatgtgacaatttttgtgacaaccaaaattttacaaaggaaatga 5244343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 35201324 - 35201389
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||  ||||| |||| |||||||| || ||| |||||| ||||||||||||    
T  35201324 gttgtgttatttgaacatccatttaaatgacaacttttgagacaattaaaattatacaaagaaaat 35201389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 39630511 - 39630572
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||||||||||| |||||| || |||| ||||  || |||||||||||||||||||||||    
T  39630511 tgttatttgaacatctatttatataataatttttaagacaatcaaaattttacaaagaaaat 39630572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 8847260 - 8847224
Alignment:
Q  193 aacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8847260 aacttttgtgataatcaaaattttacaaataaaatga 8847224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 19149171 - 19149104
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| || |||||||| |||||||||||||||||| ||||||    
T  19149171 gttgtgttatttgaacatccatatatgtgacaatttttgtgacaatcaaaattttacaaaggaaatga 19149104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 24256661 - 24256728
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||| || ||| ||  ||| ||||||||||| ||| |||||||||||||| ||||||    
T  24256661 gttgtgttatttgaaaatctatatatgtgacaacttttgtgacaattaaaattttacaaaggaaatga 24256728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 27541392 - 27541459
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  27541392 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 27541459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 32924171 - 32924238
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  32924171 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 32924238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 36670904 - 36670963
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaa 221  Q
    ||||||||||||||||||  || ||  ||||||||||||||| || ||||||||||||||    
T  36670904 gttgtgttatttgaacatccatatatgtgataacttttgtgacaaccaaaattttacaaa 36670963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 47472506 - 47472443
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||| ||| ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  47472506 tgttatttgaacatctatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 47472443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 42358529 - 42358595
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||  || ||  ||| ||||||||||| |||||||||||| ||||| ||||||    
T  42358529 ttgtgttatttgaacatccatatatgtgacaacttttgtgacaatcaaaattttgcaaaggaaatga 42358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 31157567 - 31157632
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||  || ||  ||||||||| |||||  ||||||||||||||||| ||||    
T  31157567 gttgtgttatttgaacatccatatatgtgataacttctgtgactatcaaaattttacaaaggaaat 31157632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 38926809 - 38926744
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||||||||||||||| ||| ||  ||| |||||| |||| || ||||||||||||||| ||||    
T  38926809 gttgtgttatttgaacatctatatatgtgacaactttcgtgacaaccaaaattttacaaaggaaat 38926744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 44813317 - 44813252
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||| |||||||||| ||| ||  ||| ||||||||||  |||||||||||||||||| ||||    
T  44813317 gttgtgtgatttgaacatctatatatgtgacaacttttgtggcaatcaaaattttacaaaggaaat 44813252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 35597343 - 35597283
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaag 222  Q
    ||||||||||||||| ||| || ||  ||| ||||||||||| || |||||||||||||||    
T  35597343 gttgtgttatttgaatattcatatatgtgacaacttttgtgacaaccaaaattttacaaag 35597283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 8848587 - 8848656
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  8848587 gttgtgttatttgaacatctatttagatgataatttttgtgacaatcaaaattttgcaaagaaaatgatg 8848656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 27490620 - 27490689
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||||||  |||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  27490620 gttgtgttatttgaacatccattttgatgacaacttttgtgacaatcaaaattttacaaagaaaatgatg 27490689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 29349683 - 29349622
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||||| |||||  |||||||||| ||||||||||| |||||||||||||||||||||||    
T  29349683 tgttatttcaacatccatttagatgacaacttttgtgacaatcaaaattttacaaagaaaat 29349622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 19633464 - 19633396
Alignment:
Q  162 gttgtgttatttgaacatttattta-gatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||| |||||||||||||||| || | ||||||||||||||| |||||||||||||||||| ||||||    
T  19633464 gttgtattatttgaacatttatatatgttgataacttttgtgacaatcaaaattttacaaaggaaatga 19633396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 19830365 - 19830297
Alignment:
Q  162 gttgtgttatttgaacatttattta-gatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||| |||||||||||||||| || | ||||||||||||||| |||||||||||||||||| ||||||    
T  19830365 gttgtattatttgaacatttatatatgttgataacttttgtgacaatcaaaattttacaaaggaaatga 19830297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 3838770 - 3838837
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| ||| ||  ||| ||||||||||||||| |||||||||||||| ||||||    
T  3838770 gttgtgttatttgaacatctatatatgtgacaacttttgtgataattaaaattttacaaaggaaatga 3838837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 9207777 - 9207704
Alignment:
Q  156 atatatgttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||| |||||||||||||||||| ||| ||  |||||| |||||||| || ||||||||||||||| ||||||    
T  9207777 atataagttgtgttatttgaacatctatatatgtgataatttttgtgacaaccaaaattttacaaaggaaatga 9207704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 13333060 - 13333129
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||||    
T  13333060 gttgtgttatttgaacatcgatttatatgacaacttttgagacaaccaaaattttataaagaaaatgatg 13333129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1248867 - 1248800
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||||||| |||||||||||||| ||||||    
T  1248867 gttgtgttatttgaacatccatatatgtgacaacttttgtgataattaaaattttacaaaggaaatga 1248800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 3097751 - 3097818
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  3097751 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 3097818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 9647313 - 9647246
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||   |||||||||||||| || ||||||||||||||| ||||||    
T  9647313 gttgtgttatttgaacattcatatatgcgataacttttgtgacaaccaaaattttacaaaggaaatga 9647246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 9990872 - 9990805
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||||||||||||||| ||| |||||||||||||| ||||||    
T  9990872 gttgtgttatttgaacatccatatatgtgataacttttgtgacaattaaaattttacaaaggaaatga 9990805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 22888707 - 22888774
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| |||||||||||||||||| ||||||    
T  22888707 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaatcaaaattttacaaaggaaatga 22888774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 41056637 - 41056704
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  41056637 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 41056704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 6049236 - 6049302
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||  || ||  ||| ||||||||||| |||||||||||||||||| ||||||    
T  6049236 ttgtgttatttgaacatccatatatgtgacaacttttgtgacaatcaaaattttacaaaggaaatga 6049302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 7698352 - 7698287
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||| |||||| |||  |  ||||||||||||||||||| |||||||||||||| ||||    
T  7698352 gttgtgttattagaacatctatacatgtgataacttttgtgataattaaaattttacaaaggaaat 7698287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 18846788 - 18846723
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||  |||||||||| || |||| ||| |||||||||||| |||| |||||||||    
T  18846788 tgttatttgaacatccatttagatgacaatttttatgacaatcaaaattttgcaaaaaaaatgatg 18846723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 2076750 - 2076683
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||  |  ||| ||||||||||| || ||||||||||||||||||||||    
T  2076750 gttgtgttatttgaacatcaatagatgtgacaacttttgtgacaaccaaaattttacaaagaaaatga 2076683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 18254099 - 18254166
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  18254099 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 18254166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 25270472 - 25270539
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||| | || || |||||||||| |||||||||||    
T  25270472 gttgtgttatttgaacatccatttatatgacaactttcgagacaaccaaaattttataaagaaaatga 25270539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 32477513 - 32477446
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| || |||||||| |||||| ||||||    
T  32477513 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaatttgacaaaggaaatga 32477446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 41195765 - 41195698
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  | | ||||||||||| || ||||||||||||||| ||||||    
T  41195765 gttgtgttatttgaacattcatatatgtaacaacttttgtgacaaccaaaattttacaaaggaaatga 41195698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 42421788 - 42421855
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| || |||||||||| |||| ||||||    
T  42421788 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttagaaaggaaatga 42421855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 42434300 - 42434247
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattt 215  Q
    |||||||||||||||||| |||||| |||| |||||||| ||  ||||||||||    
T  42434300 gttgtgttatttgaacatctatttatatgacaacttttgagacgatcaaaattt 42434247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 1907653 - 1907717
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||||| | |||||||||| ||||| | ||| || || || |||||||||||||    
T  1907653 gttgtgttatttgaacaatcatttagatgacaacttgtatgacaaccataaatttacaaagaaaa 1907717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 24614206 - 24614273
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  |||||||||||||||||||||||||||||||||| ||||||    
T  24614206 gttgtgttatttgaacattcatatatgtgataacttttgtgataatcaaaattttacaaaggaaatga 24614273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 9428597 - 9428530
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||||||||| |||||||| |||  |||||||||||||| | |||||||||||    
T  9428597 gttgtgttatttgaacatttatttatatgataacattttagataatcaaaatttaataaagaaaatga 9428530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 38944978 - 38944913
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||||||||| |||||| ||||| |||| |||||||  || |||||||||||||||||||||||    
T  38944978 gttgtgttatttaaacattcatttatatgacaacttttaagacaatcaaaattttacaaagaaaat 38944913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 31445499 - 31445432
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||   |||| ||||||| |||||  | |||||||||||||||||||||||||    
T  31445499 gttgtgttatttgaacatcattttatatgataatttttgcaacaatcaaaattttacaaagaaaatga 31445432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 40417955 - 40417892
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaa 225  Q
    |||||||||||||||||| |||||| | || |||||||| || || ||||||||||||||||||    
T  40417955 gttgtgttatttgaacatctatttatacgacaacttttgagacaaccaaaattttacaaagaaa 40417892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 46022157 - 46022224
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  46022157 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 46022224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 41189431 - 41189500
Alignment:
Q  162 gttgtgttatttgaacatttatttagatg--ataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || || |||  ||||||||| ||| |||||||||||||||||| ||||||    
T  41189431 gttgtgttatttgaacattcatatatatgtgataacttttatgacaatcaaaattttacaaaggaaatga 41189500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 41989630 - 41989694
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||||||  || ||  ||||||||||||||| || |||||||||||||| ||||    
T  41989630 gttgtgttatttgaacatccatatatgtgataacttttgtgacaaccaaaattttacaaaaaaaa 41989694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 7701725 - 7701658
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||| ||||| |||||||||||    
T  7701725 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaagttttataaagaaaatga 7701658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 38956508 - 38956575
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  38956508 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 38956575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 43942813 - 43942746
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  |||||| |||||||  || ||||||||||||||||||||||    
T  43942813 gttgtgttatttgaacatccatatatgtgataatttttgtggcaaccaaaattttacaaagaaaatga 43942746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 38347726 - 38347660
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataactttt-gtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||  |||||  | |||| |||| | ||||||||||||||||||||||||||    
T  38347726 gttgtgttatttgaacatacatttatctaataattttttgagataatcaaaattttacaaagaaaat 38347660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 41018845 - 41018781
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||| |  ||||||| ||| ||||||| ||| ||||| || |||||||||||||    
T  41018845 gttgtgttatttgaataactatttaggtgacaacttttatgacaatcataaatttacaaagaaaa 41018781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 4820548 - 4820481
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||  |||||| ||||||||||||| || |||||||||||||||||||||||||    
T  4820548 gttgtgttatttgaacaactatttacatgataacttttgagacaatcaaaattttacaaagaaaatga 4820481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 11612369 - 11612302
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||| |||||| ||  |||||| ||||||||||||||||||||||||||||||||||    
T  11612369 gttgtgttatttgaatatttatatatgtgataatttttgtgataatcaaaattttacaaagaaaatga 11612302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 22079453 - 22079522
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    ||||||||||||||||||  ||||||||||  |||||||||| || ||||||||| ||||||||||||||    
T  22079453 gttgtgttatttgaacatccatttagatgaccacttttgtgacaaccaaaattttgcaaagaaaatgatg 22079522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 277172 - 277104
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgat 230  Q
    |||||||||||| ||||||  ||||||||| || |||||||| || |||||||||||||||||||||||    
T  277172 gttgtgttatttaaacattcctttagatgacaatttttgtgacaaccaaaattttacaaagaaaatgat 277104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 3552046 - 3552110
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||| || ||||||||||||||    
T  3552046 ttgtgttatttgaacaaccatttggatgataacttttgtgataatcataaatttacaaagaaaat 3552110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 14818113 - 14818046
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||||||| || |||| ||||||||||| || |||||||||| |||| ||||||    
T  14818113 gttgtgttatttgaacatttatatatatgacaacttttgtgacaaccaaaattttagaaaggaaatga 14818046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 16199631 - 16199564
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  16199631 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 16199564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 26595530 - 26595463
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| ||||||||  | || ||||||||||||||||||||||    
T  26595530 gttgtgttatttgaacatccatttatatgacaacttttgaaacaaccaaaattttacaaagaaaatga 26595463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 32316818 - 32316885
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||||||||||    
T  32316818 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatga 32316885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 2241917 - 2241982
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||| ||| |||| |||||||||||||||| || ||||||  ||||||||||||||    
T  2241917 ttgtgttatttgaac-tttctttacatgataacttttgtgacaaccaaaataatacaaagaaaatga 2241982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 11014890 - 11014947
Alignment:
Q  172 ttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||| |||||| ||||||||||||| || |||||||||||||  ||||||||||    
T  11014890 ttgaacatctatttatatgataacttttgagacaatcaaaattttatgaagaaaatga 11014947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 18737460 - 18737524
Alignment:
Q  165 gtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||||||||||    
T  18737460 gtgttatttgaacatccatgtatgtgacaacttttgtgacaaccaaaattttacaaagaaaatga 18737524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 552974 - 552907
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  552974 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 552907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1156901 - 1156834
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||||||||||||||| ||||||||||||  |||| ||||||    
T  1156901 gttgtgttatttgaacatccatatatttgataacttttgtgacaatcaaaattttgtaaaggaaatga 1156834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 33430252 - 33430319
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||| ||||| || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  33430252 gttgtgttatttggacattcatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 33430319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 33603170 - 33603237
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||| |||||||||  ||||| |||| |||||||  |||  |||||||||||||||||||||||    
T  33603170 gttgtgttttttgaacatccatttatatgacaacttttaagattgtcaaaattttacaaagaaaatga 33603237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 30423443 - 30423509
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| ||||||  ||||||||||||  | |||||||  |||| |||||||||||    
T  30423443 ttgtgttatttgaacatctatttatgtgataacttttgatacaatcaaagctttataaagaaaatga 30423509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 91842 - 91801
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtga 203  Q
    |||||||||||||||||||||||||||| | |||| ||||||    
T  91842 gttgtgttatttgaacatttatttagattacaactgttgtga 91801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 39195238 - 39195171
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| |||||| |||| ||| ||||||||||||||| |||||||||||||||||    
T  39195238 gttgtgttatttgaacatctatttatatgacaacatttgtgataatcaaagttttacaaagaaaatga 39195171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 38376380 - 38376447
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| ||| ||  |||||| |||||||| |||||||||||||||||||||||||    
T  38376380 gttgtgttatttgaacatctatatatgtgataatttttgtgacaatcaaaattttacaaagaaaatga 38376447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 2575680 - 2575747
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| |||||| |||| ||||||||||| ||  ||| |||||||||||||||||    
T  2575680 gttgtgttatttgaacatctatttatatgacaacttttgtgacaactaaagttttacaaagaaaatga 2575747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 34616742 - 34616675
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| |||||| |||| |||||||| || || |||||||||| |||||||||||    
T  34616742 gttgtgttatttgaacatctatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 34616675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 43175165 - 43175098
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| |||||||||||||||||||||||||||||| ||||||    
T  43175165 gttgtgttatttgaacatccatatatgtgacaacttttgtgataatcaaaattttacaaaggaaatga 43175098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 19473847 - 19473913
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||| ||  ||||| |||| |||||||| || |||||||||||||||||||||||||    
T  19473847 ttgtgttatttgaagatgcatttatatgacaacttttgagacaatcaaaattttacaaagaaaatga 19473913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 3316546 - 3316471
Alignment:
Q  153 tctatata-tgttgtgtt-atttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    |||||||| ||||||||| ||||||||||  |||||||||| |||||||| || ||||||||||||||||| ||||    
T  3316546 tctatatagtgttgtgtttatttgaacatccatttagatgacaacttttgagacaatcaaaattttacaaaaaaaa 3316471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 26492188 - 26492121
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| ||| ||  ||| || |||||||| |||||||||||||||||| ||||||    
T  26492188 gttgtgttatttgaacatctatatatgtgacaatttttgtgacaatcaaaattttacaaaggaaatga 26492121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 26732406 - 26732339
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||||||||||    
T  26732406 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaagaaaatga 26732339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 29175406 - 29175339
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  29175406 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttacaaagtaaatga 29175339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 36178087 - 36178020
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||||||| ||  ||||||||||||||| ||  ||||||||| |||| ||||||    
T  36178087 gttgtgttatttgaacatttatatatgtgataacttttgtgacaactaaaattttataaaggaaatga 36178020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 38382502 - 38382435
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  38382502 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 38382435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 39440665 - 39440598
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| ||||||||||||| |||| ||||||    
T  39440665 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaatcaaaattttagaaaggaaatga 39440598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 44539915 - 44539848
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||| || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  44539915 gttgtgttatttgaacattcatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 44539848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 46038841 - 46038777
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||| |||||||  ||| ||||||| ||||||||| || ||||||||||||||||    
T  46038841 ttgtgttatttgaacaattattta--tgacaacttttatgataatcataaatttacaaagaaaatga 46038777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 47182022 - 47181955
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  47182022 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 47181955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 48402087 - 48402154
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  48402087 gttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaatga 48402154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 56363935 - 56364002
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||||| |||| |||||||| || || |||||||||| |||||||||||    
T  56363935 gttgtgttatttgaacatccatttacatgacaacttttgagacaaccaaaattttataaagaaaatga 56364002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 515535 - 515601
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatg 228  Q
    ||||||||||||||| ||||||||| |||| ||||||||  ||||||| || |||| ||||||||||    
T  515535 gttgtgttatttgaatatttatttatatgacaacttttgaaataatcataaatttataaagaaaatg 515601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 42395928 - 42395994
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| || ||| ||||||| ||||| |||||| ||| ||||||||| |||||||    
T  42395928 ttgtgttatttgaacatctacttatatgataatttttgagataattaaagttttacaaaaaaaatga 42395994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 21777547 - 21777478
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgatg 231  Q
    |||||||||||| |||| ||||||| ||||||| ||||  ||||||||| |||||| |||||||| ||||    
T  21777547 gttgtgttatttaaacaattatttatatgataattttttagataatcaagattttataaagaaaaagatg 21777478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 27050978 - 27051043
Alignment:
Q  164 tgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| ||  |  ||| ||||||||||| || ||||||||||||||||||||||    
T  27050978 tgtgttatttgaacattcataaatgtgacaacttttgtgacaaccaaaattttacaaagaaaatga 27051043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 31641455 - 31641520
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||| || ||  ||||||||||||||| || |||||||||| |||| ||||    
T  31641455 gttgtgttatttgaacattcatatacgtgataacttttgtgacaaccaaaattttataaaggaaat 31641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 39655005 - 39654938
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||  |||||||||||||| ||||  || || || || ||||||||||||||||    
T  39655005 gttgtgttatttgaacaactatttagatgataatttttaagacaaccataaatttacaaagaaaatga 39654938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 51986223 - 51986156
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  51986223 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 51986156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 53801649 - 53801716
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| ||||||||||| || ||||||||||||||| ||||||    
T  53801649 gttgtgttatttgaacatccatatatgtgacaacttttgtgacaaccaaaattttacaaaggaaatga 53801716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 10250406 - 10250472
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||  || ||   || ||||||||||| || ||||||||||||||||||||||    
T  10250406 ttgtgttatttgaacatccatatatgcgacaacttttgtgacaaccaaaattttacaaagaaaatga 10250472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 11068868 - 11068802
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||| || ||  ||| ||||||||||  || ||||||||||||||| ||||||    
T  11068868 ttgtgttatttgaacattcatatatgtgacaacttttgtggcaaccaaaattttacaaaggaaatga 11068802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 19748814 - 19748752
Alignment:
Q  164 tgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||| |||||| | ||||||||||||  | ||||| || |||||||||||||    
T  19748814 tgtgttatttgaacaattattttggtgataacttttgaaacaatcataaatttacaaagaaaa 19748752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 19790992 - 19791054
Alignment:
Q  164 tgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||| |||||| | ||||||||||||  | ||||| || |||||||||||||    
T  19790992 tgtgttatttgaacaattattttggtgataacttttgaaacaatcataaatttacaaagaaaa 19791054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 24575742 - 24575808
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| ||| ||  ||| ||||||||||| || |||||||||| |||| ||||||    
T  24575742 ttgtgttatttgaacatctatatatgtgacaacttttgtgacaaccaaaattttataaaggaaatga 24575808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 38510663 - 38510726
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||||||||| ||||||||| ||  |||||| |||||||| ||||||||||||| |||| ||||    
T  38510663 gttgtgttatttcaacatttatata--tgataatttttgtgacaatcaaaattttataaaggaaat 38510726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 5233560 - 5233621
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaaga 223  Q
    |||||||||||||||||| ||||||  | | ||||||||  | |||||||||||||||||||    
T  5233560 gttgtgttatttgaacatctatttatgtaacaacttttgaaacaatcaaaattttacaaaga 5233621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 37997433 - 37997368
Alignment:
Q  164 tgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||| ||||||||||| ||| ||  |||||| |||||| | || ||||||||||||||||||||||    
T  37997433 tgtgctatttgaacatctatatatgtgataatttttgttacaaccaaaattttacaaagaaaatga 37997368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 38134528 - 38134467
Alignment:
Q  168 ttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||| ||  |  ||| |||||||||||||| ||||||||||||||| ||||||    
T  38134528 ttatttgaacattcatacatgtgacaacttttgtgataaccaaaattttacaaaggaaatga 38134467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 39478592 - 39478551
Alignment:
Q  188 atgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||| ||||||||||| || ||||||||||||||||||||||    
T  39478592 atgacaacttttgtgacaaccaaaattttacaaagaaaatga 39478551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 47744402 - 47744467
Alignment:
Q  162 gttgtgttatttgaacatttatttagat-gataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    |||||||||||||||||  ||||| ||| ||||||||||| || || || ||||||||||||||||    
T  47744402 gttgtgttatttgaacaactattttgattgataacttttgggacaaccataattttacaaagaaaa 47744467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 37133752 - 37133820
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatgat 230  Q
    |||||||||||| |||||  |||||||||| ||||||||||| || |||||||||||||||||||||||    
T  37133752 gttgtgttattttaacatccatttagatgacaacttttgtgacaaccaaaattttacaaagaaaatgat 37133820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 36816507 - 36816573
Alignment:
Q  163 ttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||| ||| ||  ||| |||||||||||||||||||||||| ||||||||||||    
T  36816507 ttgtgttatttgaacatctatatatgtgacaacttttgtgataatcaaaattttgcaaagaaaatga 36816573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 37449315 - 37449382
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||| ||  || ||  |||||||||||||||||||||||||||||||||| ||||||    
T  37449315 gttgtgttatttgaatatccatatatgtgataacttttgtgataatcaaaattttacaaaggaaatga 37449382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 32133504 - 32133439
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||  ||||| ||||||| ||||| ||||| |||||||||||||| |||||    
T  32133504 gttgtgttatttgaacatccatttatatgataaattttgagataaccaaaattttacaaataaaat 32133439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 4054176 - 4054235
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaa 221  Q
    |||||||||||||||||||||| ||  ||| ||||||||||| |||||||| ||||||||    
T  4054176 gttgtgttatttgaacatttatatatgtgacaacttttgtgacaatcaaaactttacaaa 4054235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 22719621 - 22719554
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||   || ||  ||| |||||||||||||| ||||||||||||||||||||||    
T  22719621 gttgtgttatttgaacagccatatatgtgacaacttttgtgataaccaaaattttacaaagaaaatga 22719554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 24479404 - 24479337
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||| |||| || || |||||||||||||||| ||  |||||||||||||| ||||||    
T  24479404 gttgtgttatttgagcattcatatatatgataacttttgtgacaactaaaattttacaaaggaaatga 24479337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 27325939 - 27325872
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  || ||  ||| |||||| ||||||||||||||||||||||| ||||||    
T  27325939 gttgtgttatttgaacatccatatatgtgacaactttcgtgataatcaaaattttacaaaggaaatga 27325872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 29025441 - 29025374
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||| |||||  ||||| |||| |||||||| || || ||||||||||||||||||||||    
T  29025441 gttgtgttatttaaacatccatttatatgacaacttttgggacaaccaaaattttacaaagaaaatga 29025374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 34639710 - 34639647
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||  ||||| ||||||| ||||| || ||||||||||||||||| |||||||    
T  34639710 tgttatttgaacatccatttacatgataatttttgagagaatcaaaattttacaaataaaatga 34639647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 36660340 - 36660407
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||  ||  |  ||||||||||||||| ||||||||||||| |||||||||||    
T  36660340 gttgtgttatttgaacatccataaatgtgataacttttgtgacaatcaaaattttataaagaaaatga 36660407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 27854661 - 27854723
Alignment:
Q  165 gtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    |||||||||||||||| ||||  ||||||||||||  || ||| |||||||||||||||||||    
T  27854661 gtgttatttgaacattcattttcatgataacttttaagacaattaaaattttacaaagaaaat 27854723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 11253432 - 11253499
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||| |||||||||||| |||  | |||| |||||||||||  | ||||||||||||||||||||||    
T  11253432 gttgtattatttgaacatctataaatatgacaacttttgtgacgaccaaaattttacaaagaaaatga 11253499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 23754596 - 23754663
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    |||||||||||||||||||  |||| |||| ||| ||||  | || ||||||||||||||||||||||    
T  23754596 gttgtgttatttgaacattattttatatgacaacctttgcaacaaccaaaattttacaaagaaaatga 23754663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 36251503 - 36251440
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||  || ||  |||||||||| |||| |||||||||||||||||| ||||||    
T  36251503 tgttatttgaacatccatatatgtgataactttcgtgacaatcaaaattttacaaaggaaatga 36251440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 20791 - 20856
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaat 227  Q
    ||||||||||||||||||  ||||| ||||||| ||||||||||||||||||||| ||| ||||||    
T  20791 gttgtgttatttgaacatccatttaaatgataatttttgtgataatcaaaattttgcaaggaaaat 20856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 53251 - 53318
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||||||||||||| ||||||| ||||  || || ||||| |||| |||||||||||    
T  53251 gttgtgttatttgaacatttatttatatgataagtttttagacaaccaaaaatttataaagaaaatga 53318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 11963 - 11896
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||| |||||||||||| |||  | |||| |||||||||||  | ||||||||||||||||||||||    
T  11963 gttgtattatttgaacatctataaatatgacaacttttgtgacgaccaaaattttacaaagaaaatga 11896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 49472 - 49409
Alignment:
Q  166 tgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaatga 229  Q
    ||||||||||||||  || ||  ||| |||||||||||||| ||||||||||||||| ||||||    
T  49472 tgttatttgaacatccatatatgtgacaacttttgtgataaccaaaattttacaaaggaaatga 49409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 71478 - 71542
Alignment:
Q  162 gttgtgttatttgaacatttatttagatgataacttttgtgataatcaaaattttacaaagaaaa 226  Q
    ||||||||||||||||| ||||||   ||||||||||||  | ||| | ||||||||||||||||    
T  71478 gttgtgttatttgaacaattatttgtttgataacttttgataaaattataattttacaaagaaaa 71542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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