View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20153_low_5 (Length: 567)
Name: NF20153_low_5
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 243 - 551
Target Start/End: Original strand, 9248518 - 9248826
Alignment:
| Q |
243 |
tcatgttctaagaacaatagagatataaaaaattgacctggcactaggtacccttgtaggaacctcaggctgaaactcagaaggcaaaccaagaaaacca |
342 |
Q |
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| T |
9248518 |
tcatgttctaagaacaatagagatataaaaaattgacctggcactaggtacccttgtaggaacctcaggctgaaactcagaaggcaaaccaagaaaacca |
9248617 |
T |
|
| Q |
343 |
ttgaatctatcaaaagtaacatgtgacacgtgtctcacttcagttggccagctaatatctaaggaagaaacatcctccctctccacactgcaagttacaa |
442 |
Q |
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| T |
9248618 |
ttgaatctatcaaaagtaacatgtgacacgtgtctcacttcagttggccagctaatatctaaggaagaaacatcctccctctccacactgcaagttacaa |
9248717 |
T |
|
| Q |
443 |
tagatttcttaagagcagccataactatatccaatattgcaaactggttgtgatgattgttgttggatccttttgtaaattgtcttgaagcattgttgct |
542 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9248718 |
tagatttcttaagagcagccataactatatccaatattgcaaactggttttgatgattgttgttggatccttttgtaaattgtcttgaagcattgttgct |
9248817 |
T |
|
| Q |
543 |
tgaatatat |
551 |
Q |
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| T |
9248818 |
tgaatatat |
9248826 |
T |
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