View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20153_low_6 (Length: 556)
Name: NF20153_low_6
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 43 - 539
Target Start/End: Original strand, 2758287 - 2758770
Alignment:
| Q |
43 |
ggaggggttcgaaacatgtataggcattggtattgtaaaatctgaagtcattgttttttcagattttataatctgaacaccctctatacatggttcgaac |
142 |
Q |
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| T |
2758287 |
ggaggggttcgaaacatgtataggcgttggtattgtaaaatatgaagtcg-----------gattttataatctcaacaccctctatacatggttcgaac |
2758375 |
T |
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| Q |
143 |
tccctcttgtgttaaaaaatcatgtgaaaattaattgattttgacataaggaatgttaagttcagagttcgatctatatgaagtacttatcttttgaatt |
242 |
Q |
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| T |
2758376 |
cccctcttgtgttaaaaaatcaggtgaaaattaattgattttgacataaggaatgttaagttcagagtttgatctatatgaagtacttatcttttgaatt |
2758475 |
T |
|
| Q |
243 |
ttataatccgaattggtagggggaaaagtttgtcacggttgaattgtcactaaaacgattgtagctaannnnnnngcactctaaaaataggaaaaacctc |
342 |
Q |
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| T |
2758476 |
ttataatcccaattggtagggggaaaagtttgtcac-gttgaattgtcactaaaacgactgtagctaatttttttgcactctaaaaataggaaaaacctc |
2758574 |
T |
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| Q |
343 |
atttcgaattacaaaatccgatgactatctttaaaatttcggaagacatatgagatggaaggacggtggaaaaagaaattttcttaccctttctttttcc |
442 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2758575 |
attttgaattacaaaatccgatgactatctttaaaatttcggaagacatatgagatggaaggacggtggaaaaagaaattttcttaccctttctttttcc |
2758674 |
T |
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| Q |
443 |
acttgggaacaacagtaagtatgggccttcaggaattggatttgaaaaactggagttgaaaattgcttttctcactttcatttttgatcatatacac |
539 |
Q |
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| T |
2758675 |
acttgggaacaa-agtaagtataggccttcaggaattggatttgacaaactggagttgaaaattgcttttctcactttcatttttgatcatatacac |
2758770 |
T |
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