View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20153_low_7 (Length: 547)
Name: NF20153_low_7
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 119 - 363
Target Start/End: Complemental strand, 53477741 - 53477497
Alignment:
| Q |
119 |
gtggaatcattttgacatgtaatatgcatggtcttatttcttgttggatacagcatttctttgttccatcaccacactagctagtaaaaaccaaattaaa |
218 |
Q |
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| T |
53477741 |
gtggaatcattttgacatgtaatatgcatggtcttatttcttgttggatacagcatttctttgttccatcaccacactagctagtaaaaagcaaattaaa |
53477642 |
T |
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| Q |
219 |
gggatatgatttataaccttttagtgtccattacgtgttaaattctttggttattgtttcactgaacatgattcatgagttagtttgactaggaaaagca |
318 |
Q |
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| T |
53477641 |
gggatatgatttataaccttttagtgtccattacgtgttaaattctttggttattgtttcactgaacatgattcatgagttagtttgactaggaaaagca |
53477542 |
T |
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| Q |
319 |
tctaaaaagattgaaaccattaatatgttgtagaaacgaaaacac |
363 |
Q |
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| T |
53477541 |
tctaaaaagattgaaaccattaatatgttgtagaaacgaaaacac |
53477497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 461 - 535
Target Start/End: Complemental strand, 53477413 - 53477339
Alignment:
| Q |
461 |
cggtccattagagtttccttaatatttaaatacttcagttctagttatagagacaaatttttcattcaatatatt |
535 |
Q |
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| T |
53477413 |
cggtccattagagtttccttaatatttaaatacttcagttctagttatagagataaatttttcattcaatatatt |
53477339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 53477843 - 53477801
Alignment:
| Q |
17 |
agattatatcttcacatgaagaaacatccatacagattcaacc |
59 |
Q |
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| T |
53477843 |
agattatatcttcacatgaagaaacatccatacagattcaacc |
53477801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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