View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20153_low_8 (Length: 433)
Name: NF20153_low_8
Description: NF20153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20153_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 11524864 - 11525276
Alignment:
| Q |
19 |
ttatatctttaccaaaaatttaa-acgttgaatttgataagttatctctcatatatatgcaacatttaactcatacatacatagtcaatgtgggatgtaa |
117 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11524864 |
ttatatctttaccaaaaacttaagacgttgaattt-ataaattatctctcatatatatgcaacatttaactcatacatacatagtcaatgtgggatgaaa |
11524962 |
T |
|
| Q |
118 |
aaataaacacatacacttttccata--------------aatattttttacgtgttcgttttttaacacatgtttcataaatattatccttatcaaaatt |
203 |
Q |
| |
|
||||||||||||||||||||| | | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11524963 |
aaataaacacatacacttttcaaaatctttgttttgaaaattatttttaacgtgttcgttttttaacacatgtttcataaatattatccttatcaaaatt |
11525062 |
T |
|
| Q |
204 |
gatcttaggaagacctctaaccagataaaatttaaatagtcttgtaataatcatccattttgtgccaaatccacttattttttcaagagataagaagcat |
303 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11525063 |
gatcttatgaagacctctaaccagataaaatttaaatagtcttgtaataatcatcccttttgtgccgaatccacttattttttcaagagataagaagcat |
11525162 |
T |
|
| Q |
304 |
gattcagcacacagttcatataagaatagaacataaatgtttttccttctcacaaatgttgggtttaatggtgtcttccaaaccaccgtcaaaaaactga |
403 |
Q |
| |
|
|||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
11525163 |
gattcagctcccaattcatataagaatagaacataaatgtttttccttctcacaaatgttgggtttaatggtgtcttccaaaccactgtcacaaaactga |
11525262 |
T |
|
| Q |
404 |
ctaattcttaaata |
417 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11525263 |
ctaattcttaaata |
11525276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 11488236 - 11488307
Alignment:
| Q |
59 |
ttatctctcatatatatgcaacatttaactcatacatacatagtcaatgtgggatgtaaaaataaacacata |
130 |
Q |
| |
|
|||||| | |||||||| ||||||||| ||| |||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
11488236 |
ttatctataatatatatccaacatttatctcgtacatagatagccaatgtgggatgtgaaaataaacacata |
11488307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 17132469 - 17132370
Alignment:
| Q |
255 |
catccattttgtgccaaatccacttatt-ttttcaagagataagaagcatgattcagcacacagttcatataagaatagaacataaatgtttttccttct |
353 |
Q |
| |
|
||||| |||||||||||| | |||||| ||||||| ||||||||| ||||||| || | ||| ||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
17132469 |
catcccttttgtgccaaagctacttatccttttcaatagataagaatcatgatttagttcgcaggtcatataagaataaaacataaaggtttttctttct |
17132370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 2469567 - 2469510
Alignment:
| Q |
255 |
catccattttgtgccaaatccacttatt-ttttcaagagataagaagcatgattcagc |
311 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
2469567 |
catcctttttatgccaaatccacttatttttttcaagagataaggaacatgattcagc |
2469510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 25508225 - 25508277
Alignment:
| Q |
169 |
acacatgtttcataaatattatccttatcaaaattgatcttaggaagacctct |
221 |
Q |
| |
|
||||||| |||| |||| || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
25508225 |
acacatgcttcacaaattttgtccttctcaaaattgatcttaggaagtcctct |
25508277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University