View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20154_high_1 (Length: 487)

Name: NF20154_high_1
Description: NF20154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20154_high_1
NF20154_high_1
[»] chr5 (1 HSPs)
chr5 (1-474)||(11349878-11350341)
[»] chr6 (9 HSPs)
chr6 (123-474)||(31873427-31873776)
chr6 (123-350)||(7458498-7458726)
chr6 (345-474)||(7462744-7462873)
chr6 (1-105)||(31874056-31874158)
chr6 (1-105)||(7458166-7458268)
chr6 (132-246)||(18768148-18768263)
chr6 (345-456)||(18768007-18768117)
chr6 (345-456)||(18790191-18790302)
chr6 (132-202)||(18782003-18782074)
[»] chr1 (2 HSPs)
chr1 (337-456)||(18509145-18509264)
chr1 (147-246)||(18509022-18509122)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 11349878 - 11350341
Alignment:
Q  1 ctttgtcttctgtctttccattttttcggacgatctctctctcacataaagcatatctcatgaatgtttggtatatattatgtcaccatatccttatgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11349878 ctttgtcttctgtctttccattttttcggacgatctctctcgca--taaagcatatctcatgaatgtttggtatatattatgttaccatatccttatgca 11349975  T
Q  101 gcaaaagagaaagnnnnnnnnntgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatag 200  Q
    ||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11349976 gcaaaagagaaa---aaaaaaatgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatag 11350072  T
Q  201 aaggattacaaaaataagagacaaaggaattagtgaaataagtgtgaaattttttgaagtaagagcaaatccatacaatcttttttggtgataccttctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||    ||||||||||||||||||||||||||||||||||||||||    
T  11350073 aaggattacaaaaataagagacaaaggaattagtgaaataagtgtgaaaaaatttg----aagagcaaatccatacaatcttttttggtgataccttctt 11350168  T
Q  301 tgttgctgtcatggcttgttcatacgttgatgccactatgggccgccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcc 400  Q
    ||| ||||||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11350169 tgtcgctgtcatggcttgtgcatacg-tgatgctagtatgggctgccgctccattccgtcgttgactttgccggtggcgaggaaactgtcatcaccttcc 11350267  T
Q  401 cctttctcatatcttttccgtctctaatttctgtctcccattcaaaaccatttcatttctctatcttccttcat 474  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  11350268 cctttatcatatcttttccatctctaatttctgtctcccattcaaaaccatttcatctctttatcttccttcat 11350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 123 - 474
Target Start/End: Complemental strand, 31873776 - 31873427
Alignment:
Q  123 tgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataagagac 222  Q
    |||| ||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  31873776 tgttagaagaataatcactaaatgcatggtagaagaataatcaacagtcaattcacatgcagcaactacaccttatagaaggaacacaaaaataagagac 31873677  T
Q  223 aaaggaattagtgaaataagtgtgaaattttttgaagtaagagcaaatccatacaatcttttttggtgataccttctttgttgctgtcatggcttgttca 322  Q
    ||| |||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||    
T  31873676 aaacgaattagtgaaataagtgtgaaaaaatttgaagtaagagcaaatccatacaatcatttttggtgataccttctatgtcgctgtcatggcttgtcca 31873577  T
Q  323 tacgttgatgccactatgggccgccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttccgtc 422  Q
    ||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||| ||||    
T  31873576 tacattgacgccactaagggctgccgctccattccgtcgttgactttgccggtggtgaggaaactgtcatcacctt--cctttctcatatctttttcgtc 31873479  T
Q  423 tctaatttctgtctcccattcaaaaccatttcatttctctatcttccttcat 474  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||||||||||    
T  31873478 tctaatttctgccacccattcaaaaccatgtcatctctctatcttccttcat 31873427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 123 - 350
Target Start/End: Original strand, 7458498 - 7458726
Alignment:
Q  123 tgttcgaaaaataatcactaaatgcatgttagaagaataattaacaatcaattcacatgcagcaactacaccttatagaaggattacaaaaataagagac 222  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  7458498 tgttagaagaataatcactaaatgcatgttagaagaataatcaacaatcatttcacatgcagcaactacaccttatagaagaaacacaaaaataagagac 7458597  T
Q  223 aaaggaattagtgaaataagtgtgaa-attttttgaagtaagagcaaatccatacaatcttttttggtgataccttctttgttgctgtcatggcttgttc 321  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |    
T  7458598 aaaggaattagtgaaataagtgtgaattttttttgaagtaagagcaaatccatacaatcttttttggtgataccttctctattgctgtcatggcttgtgc 7458697  T
Q  322 atacgttgatgccactatgggccgccgct 350  Q
    ||||||||||||||||| |||| ||||||    
T  7458698 atacgttgatgccactacgggctgccgct 7458726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 345 - 474
Target Start/End: Original strand, 7462744 - 7462873
Alignment:
Q  345 gccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttccgtctctaatttctgtctcccattca 444  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  7462744 gccgctccattccgtcgttgactttgccggtggcgaggaaactgtcatcctcttcccctttctcatatcttttccgtctctaatttatgtaccccattca 7462843  T
Q  445 aaaccatttcatttctctatcttccttcat 474  Q
    |||||||||||| |||||||||||||||||    
T  7462844 aaaccatttcatctctctatcttccttcat 7462873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31874158 - 31874056
Alignment:
Q  1 ctttgtcttctgtctttccattttttcggacgatctctctctcacataaagcatatctcatgaatgtttggtatatattatgtcaccatatccttatgca 100  Q
    ||||||||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31874158 ctttgtcttctgtctttccattttttcagacggtctctctc--acataaagcatatctcatgaatgtttggtatatattatgtcaccatatccttatgca 31874061  T
Q  101 gcaaa 105  Q
    |||||    
T  31874060 gcaaa 31874056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7458166 - 7458268
Alignment:
Q  1 ctttgtcttctgtctttccattttttcggacgatctctctctcacataaagcatatctcatgaatgtttggtatatattatgtcaccatatccttatgca 100  Q
    ||||||||| ||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7458166 ctttgtcttttgtctttccattttttcagacgatgtctc--tcacataaagcatatctcatgaatgtttggtatatattatgtcaccatatccttatgca 7458263  T
Q  101 gcaaa 105  Q
    |||||    
T  7458264 gcaaa 7458268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 246
Target Start/End: Complemental strand, 18768263 - 18768148
Alignment:
Q  132 aataatcactaaatgcatgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaaggattacaaaaataagagacaaaggaat 230  Q
    ||||||||||| |||||||||| ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  18768263 aataatcactacatgcatgttataagaatatttaccaatcaatttacatgtcagcaactacaccttatagaaggaacacaaaaataagagacaaaggaat 18768164  T
Q  231 tagtgaaataagtgtg 246  Q
    ||||||||||||||||    
T  18768163 tagtgaaataagtgtg 18768148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 345 - 456
Target Start/End: Complemental strand, 18768117 - 18768007
Alignment:
Q  345 gccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttccgtctctaatttctgtctcccattca 444  Q
    ||||||| ||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  18768117 gccgctctattccgtcgctgactttgcctgtggcgaggaaaatgtcatcaccttcccctttctcatatctttttcgtctctaatttctg-cccccattca 18768019  T
Q  445 aaaccatttcat 456  Q
    ||||||||||||    
T  18768018 aaaccatttcat 18768007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 345 - 456
Target Start/End: Complemental strand, 18790302 - 18790191
Alignment:
Q  345 gccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttccgtctctaatttctgtctcccattca 444  Q
    ||||||||||||||||| |||||||||  ||||| |||||| | ||||||||||||| |||||||| |||||||||||||||| ||||||| |||||| |    
T  18790302 gccgctccattccgtcgctgactttgcttgtggcaaggaaaatgtcatcaccttcccatttctcatttcttttccgtctctaacttctgtcccccattaa 18790203  T
Q  445 aaaccatttcat 456  Q
    ||||||||||||    
T  18790202 aaaccatttcat 18790191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 18782074 - 18782003
Alignment:
Q  132 aataatcactaaatgcatgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaa 202  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  18782074 aataatcactacatgcatgtaagaagaataattaccaatcaattcacatgtcagcaactataccttatagaa 18782003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 337 - 456
Target Start/End: Original strand, 18509145 - 18509264
Alignment:
Q  337 tatgggccgccgctccattccgtcgttgactttgccggtggcgaggaaactatcatcaccttcccctttctcatatcttttccgtctctaatttctgtct 436  Q
    ||||||| |||||||||||||||||  ||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |     
T  18509145 tatgggctgccgctccattccgtcgccgactttgcctgtggcgaggaaaatgtcatcaccttcccctttctcatatcttttccttctctaatttctgccc 18509244  T
Q  437 cccattcaaaaccatttcat 456  Q
    ||||||||||||||||||||    
T  18509245 cccattcaaaaccatttcat 18509264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 18509022 - 18509122
Alignment:
Q  147 catgttagaagaataattaacaatcaattcacatg-cagcaactacaccttatagaaggattacaaaaataagagacaaaggaattagtgaaataagtgt 245  Q
    |||| |||||||||||||| ||||||||||||||| | ||||||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||    
T  18509022 catgctagaagaataattaccaatcaattcacatgtcggcaactacaccttaagaaaggaacacaaaaataagagacaaaggaattagtgaaataagtgt 18509121  T
Q  246 g 246  Q
    |    
T  18509122 g 18509122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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