View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20154_high_4 (Length: 297)
Name: NF20154_high_4
Description: NF20154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20154_high_4 |
 | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 29505739 - 29505998
Alignment:
| Q |
21 |
aggaaagaacagaagtacctggcttagcattcatccagtttagagcaactagacatgcattcactgcttccaccacaagaacactttcaatatcaaagca |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29505739 |
aggaaagaacagaagtacctg-cttagcattcatccagtttagaacaactagacatgtattcactgcttccaccacatgaacactttcaatatcaaagca |
29505837 |
T |
|
| Q |
121 |
ttcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctagccccatgctcatgt |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29505838 |
ttcaagaatttggaataggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctagccccatgctcatgt |
29505937 |
T |
|
| Q |
221 |
ataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgttt |
281 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
29505938 |
ataatgcttccaaaaatattgaactgtaatctcctgcatcagttattggcacttgatgttt |
29505998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 44783991 - 44784165
Alignment:
| Q |
107 |
tcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctag |
206 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||| |||| |||||||||| |
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|
| T |
44783991 |
tcaatattaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctataaaaccaacgaaactagtaaagaatcctat |
44784090 |
T |
|
| Q |
207 |
ccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgttt |
281 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||| | |||||| || |||||||||||||||| |
|
|
| T |
44784091 |
ccccatgctcatgtataacgcttccaaaaatactgaattgtcatctccagcatcaattgttggcacttgatgttt |
44784165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 83 - 281
Target Start/End: Complemental strand, 44614497 - 44614296
Alignment:
| Q |
83 |
actgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagcc |
182 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||| || | ||||| |
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|
| T |
44614497 |
actgcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaacattgagccgaccaagcc |
44614398 |
T |
|
| Q |
183 |
aacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaatt---gtcatctactgcatcagttattggcacttgatgt |
279 |
Q |
| |
|
||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |
|
|
| T |
44614397 |
aacgaaaccagtgaagaatcctatccccatgctcatgtataatgcttccaaaaatattgaattatcatcatctcctgcatcagttgttggcacttgatgt |
44614298 |
T |
|
| Q |
280 |
tt |
281 |
Q |
| |
|
|| |
|
|
| T |
44614297 |
tt |
44614296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 282
Target Start/End: Complemental strand, 35900937 - 35900733
Alignment:
| Q |
78 |
cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctata |
177 |
Q |
| |
|
|||| ||||||||| ||||||||| | |||||||||||| | ||||||||||||||| | |||||||||||||||||||| || |||||||| ||| |
|
|
| T |
35900937 |
catttactgcttcctccacaagaagattttcaatatcaatgtgttcaagaatttggagcaagtttctctccaagatggtagtaaaaatattgagcctgcc |
35900838 |
T |
|
| Q |
178 |
aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgat |
277 |
Q |
| |
|
|||||||| || | |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
35900837 |
aagccaacgaagccaatgaagaatcctatccccccactcatgtataatgcttccaaaaatattaaattgtcatctcctgcatcagttgtttgcacttgat |
35900738 |
T |
|
| Q |
278 |
gtttc |
282 |
Q |
| |
|
|||| |
|
|
| T |
35900737 |
atttc |
35900733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 273
Target Start/End: Original strand, 17809936 - 17810130
Alignment:
| Q |
79 |
attcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataa |
178 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||| || ||||||||||| ||||| ||||||||||| |||| | |
|
|
| T |
17809936 |
attcactgcttccaccacgtgaagactttcaatatcaaagtgttcaagaatctggagtaagtatctctccaagacggtagtaacaatattgagcctacca |
17810035 |
T |
|
| Q |
179 |
agccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcact |
273 |
Q |
| |
|
||||||| ||| ||| ||||| || |||||||||||||||||||||| ||| ||||| ||||| || |||||| |||||| ||| |||||||| |
|
|
| T |
17810036 |
agccaacgaaaccagtaaagaacccaagccccatgctcatgtataatgtttctaaaaacattgagttctcatctcctgcatttgttgttggcact |
17810130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 44146694 - 44146604
Alignment:
| Q |
191 |
tagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgttt |
281 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
44146694 |
tagtgaagaatcctatccccatgctcatgtagaatgcttctaaaaatattgaattgtcatctcctgcatcagtagtcggcacttgatgttt |
44146604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 11542791 - 11542862
Alignment:
| Q |
107 |
tcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataa |
178 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||| |
|
|
| T |
11542791 |
tcaatattaaagcattcaagaatttggagtaggtttctctccaagatggcagtaacgatattgagcctataa |
11542862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 11542858 - 11542919
Alignment:
| Q |
220 |
tataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgttt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
11542858 |
tataatgcttccaaaaatattgaattgtcatcttctgcatcagttgtcggcacttgatgttt |
11542919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 78 - 281
Target Start/End: Complemental strand, 182458 - 182255
Alignment:
| Q |
78 |
cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctata |
177 |
Q |
| |
|
||||||| |||||||||||| || |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
182458 |
cattcacggcttccaccacatgatgactttcaatatcaaagtgttcaagaatctggagtaagtttctctccaagatggtagtaacaatattgagcctacc |
182359 |
T |
|
| Q |
178 |
aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgat |
277 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
182358 |
aagccaatgaaaccagtgaagaatcctatccccatgctcatatataatgcttccaaaaatactgaattttcatctcctgcatccgttgttggcacttgat |
182259 |
T |
|
| Q |
278 |
gttt |
281 |
Q |
| |
|
|||| |
|
|
| T |
182258 |
gttt |
182255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 275
Target Start/End: Complemental strand, 171368 - 171174
Alignment:
| Q |
81 |
tcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaag |
180 |
Q |
| |
|
||||| ||||||||||| ||| | | |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
171368 |
tcactacttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaa |
171269 |
T |
|
| Q |
181 |
ccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttg |
275 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
171268 |
ccaacgaaaccagtgaagaatcctatccccatgctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttg |
171174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 275
Target Start/End: Original strand, 27424 - 27618
Alignment:
| Q |
81 |
tcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaag |
180 |
Q |
| |
|
||||| ||||||||||| ||| | | |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
27424 |
tcactacttccaccacatgaaaattctcaatagtaaagtattcaagaatttggagtaggtttctctccaagatggtagtaacaatattgagcctaccaaa |
27523 |
T |
|
| Q |
181 |
ccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttg |
275 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
27524 |
ccaacgaaaccagtgaagaatcctatccccatgctcatatataatgcttcaaaaaatattgaattttcatctcctgcatcagttgttggcacttg |
27618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 280
Target Start/End: Complemental strand, 26730172 - 26729914
Alignment:
| Q |
23 |
gaaagaacagaagtacctggcttagcattcatccagtttagagcaactagacatg--cattcactgcttccaccacaagaacactttcaatatcaaagca |
120 |
Q |
| |
|
|||||| || ||||||||| || | |||||||||| ||| ||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||| | |
|
|
| T |
26730172 |
gaaagagcataagtacctg-ctcatcattcatccactttggagcaactagacaagttcattcactgcttccaccacatgaaggctttcaagatcaaggtg |
26730074 |
T |
|
| Q |
121 |
ttcaagaatttggagtaggtttctctccaagatggtaggaacaatattgaccctataaagccaacaaaagtagtgaagaatcctagccccatgctcatgt |
220 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| | || |||| |||||| |||| |||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
26730073 |
ttcaagaatctggagtaagtttctctccaagacgatattaacattattgagcctaccaagccaacgaaactagtgaagaatcctatccccatgctcatgt |
26729974 |
T |
|
| Q |
221 |
ataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttgatgtt |
280 |
Q |
| |
|
|||| |||||||||||||||||||| || | | ||| || ||| ||||||||||||||| |
|
|
| T |
26729973 |
ataaagcttccaaaaatattgaattctcgtttcctgaatttgttgttggcacttgatgtt |
26729914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 29227245 - 29227342
Alignment:
| Q |
178 |
aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttg |
275 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
29227245 |
aagccaacgaaaccagtgaagaatcctagccccatgctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttg |
29227342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 29340544 - 29340641
Alignment:
| Q |
178 |
aagccaacaaaagtagtgaagaatcctagccccatgctcatgtataatgcttccaaaaatattgaattgtcatctactgcatcagttattggcacttg |
275 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
29340544 |
aagccaacgaaaccagtgaagaatcctagccccatgctcatgtagaatgcttccagaaatattgaattgtcatctcctacatcagttgttggcacttg |
29340641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 29218241 - 29218333
Alignment:
| Q |
78 |
cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattga |
170 |
Q |
| |
|
||||||||||||||| |||| || | | ||||||| | ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
29218241 |
cattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattga |
29218333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 29331540 - 29331632
Alignment:
| Q |
78 |
cattcactgcttccaccacaagaacactttcaatatcaaagcattcaagaatttggagtaggtttctctccaagatggtaggaacaatattga |
170 |
Q |
| |
|
||||||||||||||| |||| || | | ||||||| | ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
29331540 |
cattcactgcttccagcacatgatgattctcaatattatcgcattcaagaatttggagtaggtttctttccaagacggtagtaacaatattga |
29331632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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