View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20154_low_3 (Length: 421)
Name: NF20154_low_3
Description: NF20154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20154_low_3 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 29505336 - 29505725
Alignment:
| Q |
13 |
attattctataacagcaaacaatgtaatcatcccatgctttaggaatacgagatcctgcaaaaataagaattaattttagtacttcgaaatgtcatcaaa |
112 |
Q |
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|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
29505336 |
attattctataatagaaaacgatgtaatcatcccatgctttaggaatacgagatcctgcaaaaataagaattaattttagtacttgaaaatgtcataaaa |
29505435 |
T |
|
| Q |
113 |
tcagtgcaattttagtgcatgaaaaaataataaaaaccagtaactaatcatttgatcaggacatgtgatatgtatagattaattcaactatgaaaacaac |
212 |
Q |
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|||||||||||||||| || ||||||| | |||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || |
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| T |
29505436 |
tcagtgcaattttagtacaagaaaaaaca-taaacacaagtaactaatcatttgatcaggacatgtgatatgtatagattaacttgactatgaaaactac |
29505534 |
T |
|
| Q |
213 |
ggtgacatatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatat |
311 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29505535 |
gatgatgtatattatgagattgatactgtctttgatgacagattattgaacattgagaaatgcaatacaaattgtagaaaatgtttagttacacatatat |
29505634 |
T |
|
| Q |
312 |
caacagtcacatggttaatgaatttcagcagttaataaagcaaccatcccaaggctaaaagttttcacgattcggttaaaccataaaagtg |
402 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
29505635 |
caacagtcacatggttaacgaattacagcagttaataaagcaactatcccattgctaaaagttttcatgattcagttaaaccataaaagtg |
29505725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 316
Target Start/End: Complemental strand, 44614725 - 44614594
Alignment:
| Q |
186 |
atagattaattcaactatgaaaacaacggtgacatatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaatt |
284 |
Q |
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||||||||| | ||||||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||||||||||||||||| |
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| T |
44614725 |
atagattaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaatt |
44614626 |
T |
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| Q |
285 |
gtagaaaacctttagttacacatatatcaaca |
316 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
44614625 |
atagaaatgctttagttacacatatatcaaca |
44614594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 44793844 - 44793975
Alignment:
| Q |
186 |
atagattaattcaactatgaaaacaacggtgacatatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaatt |
284 |
Q |
| |
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||||||||| | ||||||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||||||||||||||||| |
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|
| T |
44793844 |
atagattaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaatt |
44793943 |
T |
|
| Q |
285 |
gtagaaaacctttagttacacatatatcaaca |
316 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
44793944 |
atagaaatgctttagttacacatatatcaaca |
44793975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 44783532 - 44783614
Alignment:
| Q |
13 |
attattctataacagcaaacaatgtaatcatcccatgctttaggaatacgagatcctgcaaaaataagaattaattttagtact |
96 |
Q |
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|||||||||||||||||| |||||||||| |||||| | |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
44783532 |
attattctataacagcaagcaatgtaatcctcccatacagtaggaa-atgagatcctgcaaaaataagaattaattttagtact |
44783614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 44783806 - 44783884
Alignment:
| Q |
322 |
atggttaatgaatttcagcagttaataaagcaaccatccc-aaggctaaaagttttcacgattcggttaaaccataaaa |
399 |
Q |
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|
||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| || | ||||| |||||||||||||| |
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|
| T |
44783806 |
atggtaaatgaatttcagtagttaataaagcaactatcccaaaggctaaaagtatttatgattcagttaaaccataaaa |
44783884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 44783626 - 44783694
Alignment:
| Q |
144 |
aaaaaccagtaactaatcatttgatcaggacatgtgatatgtatagattaattcaactatgaaaacaac |
212 |
Q |
| |
|
|||||| |||||||||| |||| |||| ||||||||||||||||| ||||| | ||||||||||||||| |
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|
| T |
44783626 |
aaaaacaagtaactaataatttaatcaagacatgtgatatgtataaattaacttaactatgaaaacaac |
44783694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 306
Target Start/End: Original strand, 11542418 - 11542579
Alignment:
| Q |
142 |
ataaaaaccagtaactaatcatttgat-caggacatgtgatatgtatagattaattcaactatgaaaacaacggtgacatatattatgagattgatactg |
240 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||||||| |||| |||||||| | ||| |||||| | ||| ||| ||||| |||||||| || |
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| T |
11542418 |
ataaaaacatgtaactaatcaatttattcaggacatgtgacatgtctagattaacttaac-----aaacaatgatgatataggttatgggattgatattg |
11542512 |
T |
|
| Q |
241 |
tctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacaca |
306 |
Q |
| |
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|||||||||||| || |||| || ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
11542513 |
tctttgatgacatgttattgatcactgagaaatgcaatacaaattgttgaagtgctttagttacaca |
11542579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 11542609 - 11542670
Alignment:
| Q |
317 |
gtcacatggttaatgaatttcagcagttaataaagcaaccatcccaaggctaaaagttttca |
378 |
Q |
| |
|
|||| ||| |||||||||||| | ||||||| ||||||| || |||||||||||||| |||| |
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|
| T |
11542609 |
gtcatatgattaatgaatttcggtagttaattaagcaactataccaaggctaaaagtcttca |
11542670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 27169 - 27269
Alignment:
| Q |
219 |
atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacag |
317 |
Q |
| |
|
||||||||| ||||||||| | |||||||||| ||||| || |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
27169 |
atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag |
27268 |
T |
|
| Q |
318 |
t |
318 |
Q |
| |
|
| |
|
|
| T |
27269 |
t |
27269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 171623 - 171523
Alignment:
| Q |
219 |
atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacag |
317 |
Q |
| |
|
||||||||| ||||||||| | |||||||||| ||||| || |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
171623 |
atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag |
171524 |
T |
|
| Q |
318 |
t |
318 |
Q |
| |
|
| |
|
|
| T |
171523 |
t |
171523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 26730398 - 26730285
Alignment:
| Q |
13 |
attattctataacagcaaacaa-tgtaatcatcccatgctttaggaatacgagatcctgcaaaaataagaa-ttaattttagtacttcgaaatgtcatca |
110 |
Q |
| |
|
||||||||| ||||||||| || || ||||||||||| | | ||||| |||||||||||||| ||| || |||| |||||||||| ||||| ||||| |
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|
| T |
26730398 |
attattctacaacagcaaaaaaatgcaatcatcccatacagaacgaataagagatcctgcaaaagtaaaaaattaaatttagtacttggaaataacatca |
26730299 |
T |
|
| Q |
111 |
aatcagtgcaattt |
124 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
26730298 |
aagcagtgcaattt |
26730285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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