View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20154_low_4 (Length: 352)
Name: NF20154_low_4
Description: NF20154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20154_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 2097999 - 2097676
Alignment:
| Q |
11 |
cacagaagtactagtataaaagtacgaaatcatgattgaaaagatacaacagttttaccatcctatcatcattgaggaaatgcaaacacctgaataaata |
110 |
Q |
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| T |
2097999 |
cacagaagtactagtataaaagtacgaaatcatgaatgaaaagatacaacagttttaccatcctatcatcattgaggaaatgcaaacacctgaaaaaata |
2097900 |
T |
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| Q |
111 |
ggaggagaggcggaaatgaggaaatgcaacttcaagggagaggtgattaaagacttaggagacatcatttacaaaatgtttgcacttttggttgcattgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097899 |
ggaggagaggcggaaatgaggaaatgcaacttcaagggagaggtgattaaaggcttaggagacatcatttacaaaatgtttgcacttttggttgcattgg |
2097800 |
T |
|
| Q |
211 |
taacactcaagttcacaaagattggcgaaacgctattcgcaaaacagtatactccttgggttgtagctgcagttttgatatttttcttactctggatttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2097799 |
taacactcaagttcacaaagattggcgaaacgctattcgcaaaacagtatactccttgggttgtagctgcagttttgatatttttcttactttggatttt |
2097700 |
T |
|
| Q |
311 |
ttccatcctacttataccagatcatat |
337 |
Q |
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||||||| ||||||||||||||||| |
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| T |
2097699 |
ttccatc---cttataccagatcatat |
2097676 |
T |
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